Variant report

Variant	rs6036
Chromosome Location	chr1:169515726-169515727
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:169434950..169436192-chr1:169515249..169516296,7	MCF-7	breast:
2	chr1:169452546..169456212-chr1:169513561..169516208,4	K562	blood:
3	chr1:169510436..169512418-chr1:169514269..169516717,2	MCF-7	breast:
4	chr1:169515126..169516318-chr21:43623703..43624223,3	K562	blood:
5	chr1:168572434..168572967-chr1:169515424..169516289,2	MCF-7	breast:
6	chr1:169449555..169458933-chr1:169508181..169519645,22	MCF-7	breast:
7	chr1:169453402..169457978-chr1:169510259..169517954,11	MCF-7	breast:
8	chr1:169435747..169436728-chr1:169515625..169516171,2	MCF-7	breast:
9	chr1:169455113..169455816-chr1:169515655..169516297,2	MCF-7	breast:
10	chr1:169434984..169435744-chr1:169515279..169516244,3	MCF-7	breast:
11	chr1:169435660..169436192-chr1:169515320..169516315,2	K562	blood:
12	chr1:169509458..169510965-chr1:169512972..169515829,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000117479	Chromatin interaction
ENSG00000213062	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10800452	0.84[ASN][1000 genomes]
rs10919184	0.84[ASN][1000 genomes]
rs10919185	0.84[ASN][1000 genomes]
rs10919187	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10919188	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10919189	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12025910	0.87[CHD][hapmap];1.00[TSI][hapmap]
rs1557571	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs1800595	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs1894691	0.87[CHD][hapmap];0.82[JPT][hapmap]
rs1894703	0.87[CHD][hapmap]
rs2301516	0.84[ASN][1000 genomes]
rs2301519	0.84[ASN][1000 genomes]
rs2301520	0.84[ASN][1000 genomes]
rs3766104	0.87[CHD][hapmap];1.00[TSI][hapmap]
rs6013	0.87[CHD][hapmap];1.00[TSI][hapmap]
rs6015	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6018	1.00[CHD][hapmap];1.00[LWK][hapmap];1.00[TSI][hapmap];0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs6024	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs6027	0.87[CHD][hapmap];1.00[TSI][hapmap]
rs6033	1.00[ASW][hapmap];1.00[CEU][hapmap];0.87[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6037	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72708039	0.84[ASN][1000 genomes]
rs916439	0.84[ASN][1000 genomes]
rs9332583	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9332601	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs9332609	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs9332629	0.87[CHD][hapmap];1.00[TSI][hapmap];0.84[ASN][1000 genomes]
rs9332661	0.87[CHD][hapmap];1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv10418	chr1:169059628-169621268	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169498400-169524000	Weak transcription	Placenta	Placenta
2	chr1:169499000-169519000	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr1:169500200-169526800	Weak transcription	Left Ventricle	heart
4	chr1:169505800-169534800	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr1:169506200-169542800	Weak transcription	Right Ventricle	heart
6	chr1:169507000-169530800	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr1:169510200-169515800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr1:169511000-169520000	Strong transcription	Primary neutrophils fromperipheralblood	blood
9	chr1:169513600-169525800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr1:169515000-169515800	Genic enhancers	HepG2	liver
11	chr1:169515200-169515800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr1:169515200-169516000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr1:169515200-169516400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr1:169515200-169516400	Genic enhancers	Liver	Liver
15	chr1:169515400-169515800	Enhancers	NHDF-Ad	bronchial
16	chr1:169515400-169515800	Enhancers	Osteobl	bone
17	chr1:169515600-169517200	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr1:169515600-169517200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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