Variant report

Variant	rs60160777
Chromosome Location	chr8:103758157-103758158
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:103662668..103675478-chr8:103749144..103775802,85	MCF-7	breast:
2	chr8:103612309..103614258-chr8:103757313..103760132,2	MCF-7	breast:
3	chr8:103755798..103759711-chr8:103816965..103819435,5	MCF-7	breast:
4	chr8:103741804..103743785-chr8:103757799..103760989,3	MCF-7	breast:
5	chr8:103755868..103758647-chr8:103758739..103761390,3	MCF-7	breast:
6	chr8:103757286..103760071-chr8:103761567..103764534,3	MCF-7	breast:
7	chr8:103756444..103760346-chr8:103768045..103771580,3	MCF-7	breast:
8	chr8:103694664..103696748-chr8:103757615..103759770,2	MCF-7	breast:
9	chr8:103756681..103759596-chr8:103798636..103801403,3	MCF-7	breast:
10	chr8:103665180..103670360-chr8:103749026..103758161,19	MCF-7	breast:
11	chr8:103748787..103753521-chr8:103757304..103760921,7	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000253669	Chromatin interaction
ENSG00000155090	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs1469767	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	esv1814245	chr8:103735804-103824566	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103751000-103762200	Weak transcription	Pancreas	Pancrea
2	chr8:103751400-103763800	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr8:103752200-103758800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr8:103752200-103759000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr8:103752600-103758600	Weak transcription	Aorta	Aorta
6	chr8:103753000-103762000	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr8:103753600-103761000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr8:103754600-103759800	Enhancers	HSMMtube	muscle
9	chr8:103755400-103759000	Weak transcription	Spleen	Spleen
10	chr8:103755600-103758800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr8:103755600-103758800	Weak transcription	Fetal Kidney	kidney
12	chr8:103755800-103758600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr8:103755800-103762800	Enhancers	HMEC	breast
14	chr8:103756600-103759600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr8:103756600-103759600	Enhancers	NH-A	brain
16	chr8:103756600-103760000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr8:103756600-103760400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr8:103756800-103760200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr8:103757000-103758800	Enhancers	Fetal Intestine Small	intestine
20	chr8:103757000-103759600	Enhancers	Muscle Satellite Cultured Cells	--
21	chr8:103757200-103758400	Enhancers	Left Ventricle	heart
22	chr8:103757200-103759600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr8:103757200-103759600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr8:103757200-103759600	Enhancers	NHDF-Ad	bronchial
25	chr8:103757200-103759600	Enhancers	NHLF	lung
26	chr8:103757200-103759800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr8:103757200-103759800	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr8:103757200-103759800	Enhancers	Colon Smooth Muscle	Colon
29	chr8:103757200-103759800	Enhancers	Lung	lung
30	chr8:103757200-103759800	Enhancers	K562	blood
31	chr8:103757200-103759800	Enhancers	NHEK	skin
32	chr8:103757200-103760000	Enhancers	Esophagus	oesophagus
33	chr8:103757200-103760000	Enhancers	Fetal Thymus	thymus
34	chr8:103757200-103760000	Enhancers	Rectal Smooth Muscle	rectum
35	chr8:103757200-103760200	Enhancers	Fetal Muscle Leg	muscle
36	chr8:103757200-103760400	Enhancers	Stomach Smooth Muscle	stomach
37	chr8:103757200-103760600	Enhancers	Skeletal Muscle Male	skeletal muscle
38	chr8:103757200-103761200	Enhancers	Fetal Muscle Trunk	muscle
39	chr8:103757400-103758200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr8:103757400-103758200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr8:103757400-103758400	Enhancers	Fetal Intestine Large	intestine
42	chr8:103757400-103759000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr8:103757400-103759400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr8:103757400-103759800	Enhancers	Skeletal Muscle Female	skeletal muscle
45	chr8:103757400-103760000	Enhancers	Right Atrium	heart
46	chr8:103757400-103760000	Enhancers	Right Ventricle	heart
47	chr8:103757400-103760200	Enhancers	Fetal Stomach	stomach
48	chr8:103757400-103764000	Enhancers	Placenta	Placenta
49	chr8:103757600-103758200	Enhancers	Brain Substantia Nigra	brain
50	chr8:103757600-103758400	Enhancers	Ovary	ovary

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