Variant report

Variant	rs1469767
Chromosome Location	chr8:103806915-103806916
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:7601160..7603904-chr8:103805589..103808353,2	MCF-7	breast:
2	chr8:103806310..103807220-chr8:103818840..103819602,2	HCT-116	colon:
3	chr8:103664425..103672321-chr8:103786823..103809844,55	MCF-7	breast:
4	chr8:103656072..103671156-chr8:103783158..103810200,133	MCF-7	breast:
5	chr8:103806083..103808991-chr8:103810445..103812933,2	K562	blood:
6	chr8:103806001..103807506-chr8:103807871..103809465,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155090	Chromatin interaction
ENSG00000253669	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs28625448	1.00[EUR][1000 genomes]
rs28649644	1.00[EUR][1000 genomes]
rs28664674	1.00[EUR][1000 genomes]
rs56720100	1.00[EUR][1000 genomes]
rs56724276	1.00[EUR][1000 genomes]
rs60160777	1.00[AMR][1000 genomes]
rs60538892	1.00[EUR][1000 genomes]
rs60587672	1.00[EUR][1000 genomes]
rs73278866	1.00[EUR][1000 genomes]
rs73278868	1.00[EUR][1000 genomes]
rs73278884	1.00[EUR][1000 genomes]
rs73278887	1.00[EUR][1000 genomes]
rs7827032	1.00[EUR][1000 genomes]
rs7839128	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	esv1814245	chr8:103735804-103824566	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
3	nsv1021898	chr8:103767324-103922482	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103798800-103808600	Enhancers	Fetal Muscle Leg	muscle
2	chr8:103799400-103811200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr8:103799600-103811000	Enhancers	Primary hematopoietic stem cells	blood
4	chr8:103800200-103807400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr8:103802000-103809200	Weak transcription	Liver	Liver
6	chr8:103802200-103807000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr8:103802200-103807400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr8:103802400-103807000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr8:103803000-103808000	Enhancers	Spleen	Spleen
10	chr8:103803600-103807200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr8:103803600-103807200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr8:103803600-103807400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr8:103803800-103807000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr8:103803800-103807000	Weak transcription	Thymus	Thymus
15	chr8:103803800-103807000	Weak transcription	Osteobl	bone
16	chr8:103803800-103807200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr8:103803800-103807400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr8:103803800-103807400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr8:103803800-103807400	Weak transcription	Brain Cingulate Gyrus	brain
20	chr8:103803800-103807400	Weak transcription	K562	blood
21	chr8:103803800-103807600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr8:103803800-103809800	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr8:103803800-103809800	Weak transcription	Stomach Mucosa	stomach
24	chr8:103803800-103816400	Weak transcription	Small Intestine	intestine
25	chr8:103803800-103817000	Weak transcription	Aorta	Aorta
26	chr8:103804000-103807000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr8:103804000-103807400	Weak transcription	NH-A	brain
28	chr8:103804200-103807200	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr8:103804200-103807600	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr8:103804400-103807200	Enhancers	Primary neutrophils fromperipheralblood	blood
31	chr8:103804600-103807400	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr8:103804800-103807600	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr8:103805400-103808200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
34	chr8:103805400-103811200	Enhancers	Fetal Intestine Small	intestine
35	chr8:103805800-103808000	Enhancers	Fetal Thymus	thymus
36	chr8:103805800-103809000	Enhancers	Fetal Muscle Trunk	muscle
37	chr8:103805800-103810800	Enhancers	Placenta	Placenta
38	chr8:103806000-103807400	Weak transcription	Brain Hippocampus Middle	brain
39	chr8:103806000-103808000	Enhancers	Fetal Heart	heart
40	chr8:103806200-103807200	Enhancers	Psoas Muscle	Psoas
41	chr8:103806200-103807800	Enhancers	Brain Germinal Matrix	brain
42	chr8:103806200-103808000	Enhancers	Primary B cells from cord blood	blood
43	chr8:103806200-103808000	Enhancers	Primary T cells from cord blood	blood
44	chr8:103806200-103808000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr8:103806200-103808000	Enhancers	Esophagus	oesophagus
46	chr8:103806200-103808000	Enhancers	Placenta Amnion	Placenta Amnion
47	chr8:103806200-103808000	Enhancers	Right Ventricle	heart
48	chr8:103806200-103808000	Enhancers	A549	lung
49	chr8:103806200-103808200	Enhancers	Breast Myoepithelial Primary Cells	Breast
50	chr8:103806200-103808200	Enhancers	Colon Smooth Muscle	Colon

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