Variant report

Variant	rs73278868
Chromosome Location	chr8:103775577-103775578
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:103662668..103675478-chr8:103749144..103775802,85	MCF-7	breast:
2	chr8:103773806..103775909-chr8:103795017..103797544,2	MCF-7	breast:
3	chr8:103760932..103779637-chr8:103816413..103823932,43	MCF-7	breast:
4	chr8:103774344..103777315-chr8:103815443..103817769,2	K562	blood:
5	chr8:103767561..103771444-chr8:103771777..103777513,6	MCF-7	breast:
6	chr8:103774355..103775966-chr8:103779629..103782231,2	K562	blood:
7	chr8:103766515..103768450-chr8:103774497..103776165,2	K562	blood:
8	chr8:103742505..103745326-chr8:103773806..103776167,2	MCF-7	breast:
9	chr8:103773922..103776479-chr8:103817460..103820148,2	K562	blood:
10	chr8:103766487..103768450-chr8:103773089..103775997,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000155090	Chromatin interaction
ENSG00000253669	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1469767	1.00[EUR][1000 genomes]
rs16869784	1.00[AMR][1000 genomes]
rs16869786	1.00[AMR][1000 genomes]
rs16869789	1.00[AMR][1000 genomes]
rs28625448	1.00[EUR][1000 genomes]
rs28649644	1.00[EUR][1000 genomes]
rs28664674	1.00[EUR][1000 genomes]
rs56720100	1.00[EUR][1000 genomes]
rs56724276	1.00[EUR][1000 genomes]
rs60538892	1.00[EUR][1000 genomes]
rs60587672	1.00[EUR][1000 genomes]
rs7007892	1.00[AMR][1000 genomes]
rs73278866	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73278884	1.00[EUR][1000 genomes]
rs73278887	1.00[EUR][1000 genomes]
rs73701510	1.00[AMR][1000 genomes]
rs7827032	1.00[EUR][1000 genomes]
rs7839128	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	esv1814245	chr8:103735804-103824566	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
3	nsv1021898	chr8:103767324-103922482	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103767200-103779000	Weak transcription	Stomach Smooth Muscle	stomach
2	chr8:103770200-103776200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr8:103770200-103776800	Weak transcription	Fetal Thymus	thymus
4	chr8:103771200-103776000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr8:103771200-103776200	Weak transcription	Osteobl	bone
6	chr8:103771600-103776600	Weak transcription	NHEK	skin
7	chr8:103772000-103776600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr8:103772400-103780200	Weak transcription	A549	lung
9	chr8:103773600-103775800	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr8:103774000-103775600	Enhancers	HepG2	liver
11	chr8:103774200-103775800	Enhancers	Liver	Liver
12	chr8:103774200-103779600	Weak transcription	Psoas Muscle	Psoas
13	chr8:103774400-103779200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr8:103774600-103779000	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr8:103774600-103779200	Weak transcription	Lung	lung
16	chr8:103774600-103779200	Weak transcription	Pancreas	Pancrea
17	chr8:103774600-103779600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr8:103774800-103780000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr8:103775000-103776200	Weak transcription	Adipose Nuclei	Adipose
20	chr8:103775000-103777200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr8:103775000-103778000	Weak transcription	Fetal Muscle Leg	muscle
22	chr8:103775000-103779000	Weak transcription	Aorta	Aorta
23	chr8:103775000-103779000	Weak transcription	Right Atrium	heart
24	chr8:103775000-103779600	Weak transcription	Fetal Lung	lung
25	chr8:103775000-103780000	Weak transcription	Brain Anterior Caudate	brain

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