Variant report

Variant	rs7007892
Chromosome Location	chr8:103704936-103704937
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFIC	chr8:103704645-103705352	ECC-1	luminal epithelium:	n/a	chr8:103704878-103704894
2	POLR2A	chr8:103704802-103705464	U87	brain:	n/a	n/a
3	MYC	chr8:103704766-103705179	MCF10A-Er-Src	breast:	n/a	n/a
4	PBX3	chr8:103704757-103705251	SK-N-SH	brain:	n/a	n/a
5	POLR2A	chr8:103704802-103705470	U87	brain:	n/a	n/a
6	FOS	chr8:103704822-103705226	MCF10A-Er-Src	breast:	n/a	chr8:103705011-103705018 chr8:103705008-103705019 chr8:103705010-103705018 chr8:103705009-103705019 chr8:103705009-103705019 chr8:103705010-103705018
7	STAT3	chr8:103704763-103705252	MCF10A-Er-Src	breast:	n/a	chr8:103705073-103705084 chr8:103704986-103704997
8	FOS	chr8:103704822-103705350	HUVEC	blood vessel:	n/a	chr8:103705011-103705018 chr8:103705008-103705019 chr8:103705010-103705018 chr8:103705009-103705019 chr8:103705009-103705019 chr8:103705010-103705018
9	STAT3	chr8:103704791-103705271	MCF10A-Er-Src	breast:	n/a	chr8:103705073-103705084 chr8:103704986-103704997
10	STAT3	chr8:103704763-103705253	MCF10A-Er-Src	breast:	n/a	chr8:103705073-103705084 chr8:103704986-103704997
11	NFIC	chr8:103704706-103705388	SK-N-SH	brain:	n/a	chr8:103704878-103704894
12	FOS	chr8:103704700-103705263	MCF10A-Er-Src	breast:	n/a	chr8:103705011-103705018 chr8:103705008-103705019 chr8:103705010-103705018 chr8:103705009-103705019 chr8:103705009-103705019 chr8:103705010-103705018
13	FOS	chr8:103704762-103705472	MCF10A-Er-Src	breast:	n/a	chr8:103705011-103705018 chr8:103705008-103705019 chr8:103705010-103705018 chr8:103705009-103705019 chr8:103705009-103705019 chr8:103705010-103705018
14	POLR2A	chr8:103704897-103705209	HCT-116	colon:	n/a	n/a
15	CEBPB	chr8:103704868-103705700	IMR90	lung:	n/a	chr8:103705526-103705539 chr8:103705527-103705538
16	STAT3	chr8:103704733-103705261	MCF10A-Er-Src	breast:	n/a	chr8:103705073-103705084 chr8:103704986-103704997
17	MYC	chr8:103704771-103705179	MCF10A-Er-Src	breast:	n/a	n/a
18	STAT3	chr8:103704860-103705160	MCF10A-Er-Src	breast:	n/a	chr8:103705073-103705084 chr8:103704986-103704997
19	FOSL2	chr8:103704873-103705354	SK-N-SH	brain:	n/a	chr8:103705011-103705018 chr8:103705010-103705018 chr8:103705009-103705019 chr8:103705009-103705019 chr8:103705010-103705018
20	POLR2A	chr8:103704873-103705233	SK-N-SH	brain:	n/a	n/a
21	FOS	chr8:103704810-103705246	MCF10A-Er-Src	breast:	n/a	chr8:103705011-103705018 chr8:103705008-103705019 chr8:103705010-103705018 chr8:103705009-103705019 chr8:103705009-103705019 chr8:103705010-103705018
22	SPI1	chr8:103704895-103705284	HL-60	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr8:103690697..103697091-chr8:103702860..103706318,8	MCF-7	breast:
2	chr8:103680729..103682800-chr8:103703137..103705499,2	MCF-7	breast:
3	chr8:103668324..103669911-chr8:103703170..103705007,2	MCF-7	breast:
4	chr8:103699116..103701941-chr8:103703908..103705714,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000250684	TF binding region
ENSG00000250684	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16869784	1.00[AMR][1000 genomes]
rs16869786	1.00[AMR][1000 genomes]
rs16869789	1.00[AMR][1000 genomes]
rs73278866	1.00[AMR][1000 genomes]
rs73278868	1.00[AMR][1000 genomes]
rs73701510	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv1026755	chr8:103676970-103728556	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1018625	chr8:103676970-103729197	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103679800-103706400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:103701400-103705000	Weak transcription	Fetal Muscle Trunk	muscle
3	chr8:103701400-103708200	Weak transcription	K562	blood
4	chr8:103703800-103705800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr8:103703800-103706000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr8:103704000-103705200	Enhancers	Gastric	stomach
7	chr8:103704000-103705600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr8:103704000-103705600	Enhancers	HMEC	breast
9	chr8:103704200-103705400	Enhancers	NHLF	lung
10	chr8:103704200-103705600	Enhancers	Osteobl	bone
11	chr8:103704200-103705800	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr8:103704400-103705400	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr8:103704400-103705400	Enhancers	NH-A	brain
14	chr8:103704400-103705600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr8:103704400-103705600	Enhancers	Hela-S3	cervix
16	chr8:103704400-103705600	Enhancers	HUVEC	blood vessel
17	chr8:103704400-103705800	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr8:103704400-103706000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr8:103704600-103705000	Flanking Active TSS	NHEK	skin
20	chr8:103704600-103705200	Enhancers	Sigmoid Colon	Sigmoid Colon
21	chr8:103704600-103705400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr8:103704600-103705400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr8:103704600-103705400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr8:103704600-103705400	Enhancers	HSMM	muscle
25	chr8:103704600-103705400	Enhancers	NHDF-Ad	bronchial
26	chr8:103704600-103705600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr8:103704600-103705600	Enhancers	Muscle Satellite Cultured Cells	--
28	chr8:103704800-103705200	Enhancers	Duodenum Smooth Muscle	Duodenum
29	chr8:103704800-103705400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr8:103704800-103705400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr8:103704800-103705400	Enhancers	Stomach Mucosa	stomach
32	chr8:103704800-103705400	Enhancers	A549	lung
33	chr8:103704800-103705600	Enhancers	HSMMtube	muscle

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