Variant report

Variant	rs16869786
Chromosome Location	chr8:103789455-103789456
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:103788996..103790949-chr8:103819445..103820984,2	MCF-7	breast:
2	chr8:103664425..103672321-chr8:103786823..103809844,55	MCF-7	breast:
3	chr8:103665334..103669593-chr8:103787545..103791450,4	K562	blood:
4	chr8:103786719..103790690-chr8:103792046..103795484,6	MCF-7	breast:
5	chr8:103656072..103671156-chr8:103783158..103810200,133	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155090	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16869784	1.00[AMR][1000 genomes]
rs16869789	1.00[AMR][1000 genomes]
rs7007892	1.00[AMR][1000 genomes]
rs73278866	1.00[AMR][1000 genomes]
rs73278868	1.00[AMR][1000 genomes]
rs73701510	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	esv1814245	chr8:103735804-103824566	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
3	nsv1021898	chr8:103767324-103922482	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
4	nsv519814	chr8:103778809-103806914	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103776600-103790600	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr8:103780400-103791600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr8:103780600-103794800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr8:103781600-103793800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr8:103782800-103794600	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr8:103783000-103793800	Weak transcription	Stomach Smooth Muscle	stomach
7	chr8:103786400-103790400	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr8:103786800-103793800	Weak transcription	Aorta	Aorta
9	chr8:103786800-103793800	Weak transcription	Right Ventricle	heart
10	chr8:103786800-103801000	Weak transcription	Small Intestine	intestine
11	chr8:103787000-103794200	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr8:103787200-103789600	Enhancers	Liver	Liver
13	chr8:103787200-103799800	Weak transcription	HMEC	breast
14	chr8:103787400-103793400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr8:103787600-103793800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr8:103787800-103789600	Enhancers	A549	lung
17	chr8:103787800-103795000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr8:103788000-103789600	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr8:103788400-103789600	Enhancers	Adipose Nuclei	Adipose
20	chr8:103788400-103789600	Enhancers	Fetal Lung	lung
21	chr8:103788400-103789600	Enhancers	Left Ventricle	heart
22	chr8:103788400-103790400	Enhancers	Fetal Muscle Leg	muscle
23	chr8:103788800-103789800	Enhancers	Fetal Muscle Trunk	muscle
24	chr8:103789200-103789600	Enhancers	Primary neutrophils fromperipheralblood	blood
25	chr8:103789200-103793600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr8:103789200-103793600	Weak transcription	Pancreas	Pancrea
27	chr8:103789200-103793800	Weak transcription	Lung	lung
28	chr8:103789200-103794400	Weak transcription	Brain Hippocampus Middle	brain
29	chr8:103789200-103794600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr8:103789200-103795000	Weak transcription	K562	blood
31	chr8:103789200-103800400	Weak transcription	Gastric	stomach
32	chr8:103789400-103790400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr8:103789400-103790800	Enhancers	HepG2	liver
34	chr8:103789400-103793000	Weak transcription	Placenta	Placenta
35	chr8:103789400-103793000	Weak transcription	Fetal Thymus	thymus
36	chr8:103789400-103793400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr8:103789400-103793400	Weak transcription	Colon Smooth Muscle	Colon
38	chr8:103789400-103793400	Weak transcription	Ovary	ovary
39	chr8:103789400-103793600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr8:103789400-103793600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr8:103789400-103793600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr8:103789400-103793600	Weak transcription	Fetal Stomach	stomach
43	chr8:103789400-103793600	Weak transcription	Right Atrium	heart
44	chr8:103789400-103793600	Weak transcription	Spleen	Spleen
45	chr8:103789400-103793800	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr8:103789400-103793800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr8:103789400-103794000	Weak transcription	Fetal Heart	heart
48	chr8:103789400-103794400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr8:103789400-103794800	Weak transcription	Esophagus	oesophagus
50	chr8:103789400-103800000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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