Variant report

Variant	rs73278887
Chromosome Location	chr8:103796928-103796929
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:103793293..103798105-chr8:103798745..103802952,14	MCF-7	breast:
2	chr8:103793090..103794674-chr8:103795645..103798018,2	MCF-7	breast:
3	chr8:103664425..103672321-chr8:103786823..103809844,55	MCF-7	breast:
4	chr8:103773806..103775909-chr8:103795017..103797544,2	MCF-7	breast:
5	chr8:103656072..103671156-chr8:103783158..103810200,133	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155090	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1469767	1.00[EUR][1000 genomes]
rs28625448	1.00[EUR][1000 genomes]
rs28649644	1.00[EUR][1000 genomes]
rs28664674	1.00[EUR][1000 genomes]
rs56720100	1.00[EUR][1000 genomes]
rs56724276	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60538892	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60587672	1.00[EUR][1000 genomes]
rs73278866	1.00[EUR][1000 genomes]
rs73278868	1.00[EUR][1000 genomes]
rs73278883	0.85[AFR][1000 genomes]
rs73278884	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7827032	1.00[EUR][1000 genomes]
rs7839128	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	esv1814245	chr8:103735804-103824566	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
3	nsv1021898	chr8:103767324-103922482	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
4	nsv519814	chr8:103778809-103806914	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103786800-103801000	Weak transcription	Small Intestine	intestine
2	chr8:103787200-103799800	Weak transcription	HMEC	breast
3	chr8:103789200-103800400	Weak transcription	Gastric	stomach
4	chr8:103789400-103800000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr8:103789400-103800400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr8:103792800-103797400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
7	chr8:103793600-103797600	Enhancers	Spleen	Spleen
8	chr8:103793600-103800800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr8:103794000-103799000	Weak transcription	Colon Smooth Muscle	Colon
10	chr8:103794200-103801200	Weak transcription	Fetal Kidney	kidney
11	chr8:103794600-103797000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr8:103794600-103797000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr8:103794600-103800000	Weak transcription	Brain Hippocampus Middle	brain
14	chr8:103794800-103799800	Weak transcription	Fetal Heart	heart
15	chr8:103795000-103799000	Weak transcription	Lung	lung
16	chr8:103795000-103799800	Weak transcription	Stomach Smooth Muscle	stomach
17	chr8:103795200-103799800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr8:103795200-103799800	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr8:103795200-103799800	Weak transcription	Stomach Mucosa	stomach
20	chr8:103795200-103800000	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr8:103795200-103800200	Weak transcription	Aorta	Aorta
22	chr8:103795200-103800200	Weak transcription	Ovary	ovary
23	chr8:103795200-103800200	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr8:103795200-103800400	Weak transcription	Fetal Muscle Trunk	muscle
25	chr8:103795200-103804400	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr8:103795600-103798200	Weak transcription	Fetal Muscle Leg	muscle
27	chr8:103795600-103799000	Weak transcription	Left Ventricle	heart
28	chr8:103795600-103799000	Weak transcription	HSMMtube	muscle
29	chr8:103795600-103799000	Weak transcription	K562	blood
30	chr8:103795600-103799200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr8:103795600-103799200	Weak transcription	Right Ventricle	heart
32	chr8:103795600-103799800	Weak transcription	Fetal Intestine Large	intestine
33	chr8:103795600-103799800	Weak transcription	Fetal Lung	lung
34	chr8:103795600-103800400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr8:103795600-103801000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr8:103795600-103801000	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr8:103795600-103801000	Weak transcription	Primary T cells from cord blood	blood
38	chr8:103795600-103801200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr8:103795600-103803000	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr8:103795800-103797400	Enhancers	HepG2	liver
41	chr8:103795800-103797600	Enhancers	Liver	Liver
42	chr8:103795800-103799000	Weak transcription	Right Atrium	heart
43	chr8:103795800-103799000	Weak transcription	HSMM	muscle
44	chr8:103795800-103799400	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr8:103795800-103799800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr8:103795800-103799800	Weak transcription	Adipose Nuclei	Adipose
47	chr8:103795800-103799800	Weak transcription	Hela-S3	cervix
48	chr8:103795800-103799800	Weak transcription	NHLF	lung
49	chr8:103795800-103800000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr8:103795800-103800000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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