Variant report

Variant	rs56720100
Chromosome Location	chr8:103769218-103769219
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:24)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:24 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:103662668..103675478-chr8:103749144..103775802,85	MCF-7	breast:
2	chr8:103767561..103771444-chr8:103771777..103777513,6	MCF-7	breast:
3	chr8:103664572..103671079-chr8:103764540..103772964,28	MCF-7	breast:
4	chr8:103769042..103771563-chr8:103778663..103780380,2	MCF-7	breast:
5	chr8:103714554..103716653-chr8:103768887..103770568,2	MCF-7	breast:
6	chr8:103667177..103669580-chr8:103768121..103770682,2	K562	blood:
7	chr8:103760932..103779637-chr8:103816413..103823932,43	MCF-7	breast:
8	chr8:103764292..103766673-chr8:103768263..103771014,3	K562	blood:
9	chr8:103661922..103664051-chr8:103767209..103770139,2	MCF-7	breast:
10	chr8:103756444..103760346-chr8:103768045..103771580,3	MCF-7	breast:
11	chr8:103767968..103770293-chr8:103807943..103809960,2	MCF-7	breast:
12	chr8:103768194..103770313-chr8:103790495..103792249,2	K562	blood:
13	chr8:103769141..103772135-chr8:103823545..103826009,2	K562	blood:
14	chr8:103769034..103771608-chr8:103804532..103806280,2	MCF-7	breast:
15	chr8:103768653..103771082-chr8:103821061..103822803,2	K562	blood:
16	chr12:57481255..57483415-chr8:103767287..103769959,2	MCF-7	breast:
17	chr8:103766291..103774512-chr8:103816859..103823821,31	MCF-7	breast:
18	chr8:103750218..103752846-chr8:103768689..103770779,2	MCF-7	breast:
19	chr8:103768858..103770441-chr8:103782319..103784370,2	MCF-7	breast:
20	chr8:103760606..103764536-chr8:103766748..103770652,5	MCF-7	breast:
21	chr8:103768552..103771616-chr8:103798960..103803059,6	MCF-7	breast:
22	chr8:103768328..103770834-chr8:103776432..103779286,2	K562	blood:
23	chr8:103654034..103655784-chr8:103767681..103769751,2	MCF-7	breast:
24	chr8:103748444..103753389-chr8:103765827..103771971,8	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000166886	Chromatin interaction
ENSG00000253669	Chromatin interaction
ENSG00000166881	Chromatin interaction
ENSG00000155090	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1469767	1.00[EUR][1000 genomes]
rs28625448	1.00[EUR][1000 genomes]
rs28649644	1.00[EUR][1000 genomes]
rs28664674	1.00[EUR][1000 genomes]
rs56724276	1.00[EUR][1000 genomes]
rs60538892	1.00[EUR][1000 genomes]
rs60587672	1.00[EUR][1000 genomes]
rs73278866	1.00[EUR][1000 genomes]
rs73278868	1.00[EUR][1000 genomes]
rs73278884	1.00[EUR][1000 genomes]
rs73278887	1.00[EUR][1000 genomes]
rs7827032	1.00[EUR][1000 genomes]
rs7839128	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	esv1814245	chr8:103735804-103824566	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
3	nsv1021898	chr8:103767324-103922482	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103762400-103770000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr8:103762400-103774200	Weak transcription	Aorta	Aorta
3	chr8:103764200-103770600	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr8:103765800-103770600	Enhancers	Muscle Satellite Cultured Cells	--
5	chr8:103765800-103771200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr8:103765800-103771800	Enhancers	Placenta Amnion	Placenta Amnion
7	chr8:103766000-103770400	Enhancers	HSMMtube	muscle
8	chr8:103766000-103771400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr8:103766000-103771400	Enhancers	Esophagus	oesophagus
10	chr8:103766000-103771600	Enhancers	Hela-S3	cervix
11	chr8:103766000-103771800	Enhancers	A549	lung
12	chr8:103766000-103772000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr8:103766200-103771200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr8:103766600-103770400	Weak transcription	Spleen	Spleen
15	chr8:103766600-103771400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr8:103767000-103769400	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr8:103767000-103769400	Weak transcription	Fetal Muscle Trunk	muscle
18	chr8:103767000-103770200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr8:103767000-103770800	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr8:103767000-103770800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr8:103767000-103770800	Weak transcription	Fetal Lung	lung
22	chr8:103767000-103771800	Enhancers	HMEC	breast
23	chr8:103767000-103774800	Weak transcription	Brain Anterior Caudate	brain
24	chr8:103767200-103774200	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr8:103767200-103774400	Weak transcription	Adipose Nuclei	Adipose
26	chr8:103767200-103779000	Weak transcription	Stomach Smooth Muscle	stomach
27	chr8:103767600-103770400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr8:103767600-103772000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr8:103768000-103769400	Enhancers	Primary hematopoietic stem cells short term culture	blood
30	chr8:103768000-103769800	Enhancers	K562	blood
31	chr8:103768000-103770200	Enhancers	Fetal Thymus	thymus
32	chr8:103768000-103771600	Enhancers	Placenta	Placenta
33	chr8:103768200-103769600	Flanking Active TSS	Osteobl	bone
34	chr8:103768200-103769800	Flanking Active TSS	NH-A	brain
35	chr8:103768200-103770200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr8:103768200-103770400	Enhancers	NHDF-Ad	bronchial
37	chr8:103768200-103771000	Enhancers	NHLF	lung
38	chr8:103768200-103771200	Enhancers	Stomach Mucosa	stomach
39	chr8:103768400-103769800	Enhancers	Fetal Intestine Small	intestine
40	chr8:103768400-103769800	Flanking Active TSS	NHEK	skin
41	chr8:103768600-103769400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr8:103768600-103769600	Bivalent Enhancer	HepG2	liver
43	chr8:103768800-103769600	Enhancers	Left Ventricle	heart
44	chr8:103768800-103769600	Enhancers	Right Ventricle	heart
45	chr8:103768800-103769800	Flanking Active TSS	HSMM	muscle
46	chr8:103768800-103770200	Enhancers	Pancreas	Pancrea
47	chr8:103768800-103771200	Enhancers	Lung	lung
48	chr8:103768800-103771600	Enhancers	ES-I3 Cell Line	embryonic stem cell
49	chr8:103769000-103769400	Enhancers	Fetal Muscle Leg	muscle
50	chr8:103769000-103769400	Enhancers	Skeletal Muscle Male	skeletal muscle

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