Variant report

Variant	rs601673
Chromosome Location	chr11:65550910-65550911
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:65544951..65562337-chr11:65623093..65630859,34	MCF-7	breast:
2	chr11:65549748..65553562-chr11:65663861..65667886,4	K562	blood:
3	chr11:65545624..65552162-chr11:65622017..65629334,15	K562	blood:
4	chr11:65550550..65552116-chr11:65570542..65573431,2	MCF-7	breast:
5	chr11:65549963..65553451-chr11:65657304..65660070,4	K562	blood:
6	chr11:65415695..65418870-chr11:65549508..65552161,3	MCF-7	breast:
7	chr11:65548465..65551454-chr11:65582521..65585246,2	K562	blood:
8	chr11:65545624..65551607-chr11:65624049..65629334,14	K562	blood:
9	chr11:65487717..65490491-chr11:65548061..65551683,3	MCF-7	breast:
10	chr11:65545830..65548787-chr11:65550897..65553141,2	K562	blood:
11	chr11:65549046..65552132-chr11:65553796..65556282,6	K562	blood:
12	chr11:65546169..65552016-chr11:65555022..65558350,9	K562	blood:

No data

Variant related genes	Relation type
ENSG00000254470	Chromatin interaction
ENSG00000172922	Chromatin interaction
ENSG00000213445	Chromatin interaction
ENSG00000172757	Chromatin interaction
ENSG00000175602	Chromatin interaction
ENSG00000172818	Chromatin interaction
ENSG00000175827	Chromatin interaction
ENSG00000265874	Chromatin interaction
ENSG00000172732	Chromatin interaction
ENSG00000255120	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10459016	0.98[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11227280	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11227286	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11227292	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11227297	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11537211	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12223803	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60378774	1.00[EUR][1000 genomes]
rs7112966	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897718	chr11:65140209-65577516	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1003 gene(s)	inside rSNPs	diseases
2	nsv897736	chr11:65335705-65676516	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	227 gene(s)	inside rSNPs	diseases
3	nsv430401	chr11:65419324-65788024	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	224 gene(s)	inside rSNPs	diseases
4	nsv897758	chr11:65490756-65564035	Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
5	nsv897759	chr11:65543827-65554502	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	26 gene(s)	inside rSNPs	diseases
6	nsv897760	chr11:65545306-65559266	Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65548600-65553400	Weak transcription	Gastric	stomach
2	chr11:65549000-65551000	Bivalent Enhancer	Fetal Thymus	thymus
3	chr11:65549000-65553000	Enhancers	Placenta	Placenta
4	chr11:65549200-65551000	Bivalent Enhancer	Thymus	Thymus
5	chr11:65549200-65552000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:65549200-65552000	Enhancers	NHEK	skin
7	chr11:65549200-65552200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr11:65549200-65552200	Enhancers	HMEC	breast
9	chr11:65549200-65552600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr11:65549200-65552600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr11:65549200-65554200	Weak transcription	Right Atrium	heart
12	chr11:65549400-65551000	Enhancers	Esophagus	oesophagus
13	chr11:65549400-65551400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr11:65549400-65552000	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr11:65549400-65552600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr11:65549400-65553000	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr11:65549600-65551600	Weak transcription	Fetal Intestine Small	intestine
18	chr11:65549600-65551800	Weak transcription	Duodenum Mucosa	Duodenum
19	chr11:65549600-65552200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr11:65549600-65552400	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr11:65549600-65552600	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr11:65549600-65552800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr11:65549600-65553000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr11:65549600-65553400	Weak transcription	Colonic Mucosa	Colon
25	chr11:65549600-65553400	Weak transcription	Pancreas	Pancrea
26	chr11:65549800-65552800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr11:65550200-65551600	Weak transcription	Primary neutrophils fromperipheralblood	blood
28	chr11:65550200-65551600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr11:65550600-65551600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr11:65550600-65551600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr11:65550800-65551200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr11:65550800-65552800	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr11:65550800-65553200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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