Variant report

Variant	rs60167419
Chromosome Location	chr7:79507745-79507746
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1009199	0.90[AFR][1000 genomes]
rs11977794	0.87[AMR][1000 genomes]
rs12112783	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs12113913	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2107408	0.81[AFR][1000 genomes]
rs60424611	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs61366591	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6466822	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6466823	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6949761	0.81[AFR][1000 genomes]
rs73368683	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73368688	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888522	chr7:79402551-79619012	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv607675	chr7:79495456-79519229	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79506200-79507800	Enhancers	NHLF	lung
2	chr7:79507600-79509200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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