Variant report

Variant	rs60424611
Chromosome Location	chr7:79507588-79507589
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs1008311	0.97[ASN][1000 genomes]
rs1009198	0.91[ASN][1000 genomes]
rs1009199	0.98[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs10256778	0.89[ASN][1000 genomes]
rs10486911	1.00[ASN][1000 genomes]
rs10486912	0.96[ASN][1000 genomes]
rs11974696	0.89[ASN][1000 genomes]
rs11975054	0.97[ASN][1000 genomes]
rs11975127	0.83[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs12112783	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12113482	0.81[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs12113913	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12531185	0.97[ASN][1000 genomes]
rs1319297	0.91[ASN][1000 genomes]
rs16886703	0.93[ASN][1000 genomes]
rs16886704	0.93[ASN][1000 genomes]
rs17152926	0.83[ASN][1000 genomes]
rs17152944	0.80[ASN][1000 genomes]
rs17152972	0.97[ASN][1000 genomes]
rs17152982	1.00[ASN][1000 genomes]
rs17152992	1.00[ASN][1000 genomes]
rs17153038	0.98[ASN][1000 genomes]
rs17153067	0.96[ASN][1000 genomes]
rs17153072	0.96[ASN][1000 genomes]
rs17153087	0.93[ASN][1000 genomes]
rs17153094	0.93[ASN][1000 genomes]
rs17793556	0.97[ASN][1000 genomes]
rs1922731	0.93[ASN][1000 genomes]
rs1985747	0.94[ASN][1000 genomes]
rs1985821	0.90[ASN][1000 genomes]
rs2107408	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2428627	0.91[ASN][1000 genomes]
rs2525815	0.91[ASN][1000 genomes]
rs2525816	0.91[ASN][1000 genomes]
rs2525820	0.91[ASN][1000 genomes]
rs2525822	0.91[ASN][1000 genomes]
rs2525825	0.91[ASN][1000 genomes]
rs2525826	0.94[ASN][1000 genomes]
rs2525827	0.94[ASN][1000 genomes]
rs2525835	0.93[ASN][1000 genomes]
rs2707882	0.91[ASN][1000 genomes]
rs2707883	0.91[ASN][1000 genomes]
rs2707896	0.91[ASN][1000 genomes]
rs2707911	0.91[ASN][1000 genomes]
rs2707920	0.93[ASN][1000 genomes]
rs2707922	0.93[ASN][1000 genomes]
rs333209	0.87[ASN][1000 genomes]
rs333210	0.87[ASN][1000 genomes]
rs333211	0.87[ASN][1000 genomes]
rs4352782	0.94[ASN][1000 genomes]
rs4394329	0.83[ASN][1000 genomes]
rs4460297	0.94[ASN][1000 genomes]
rs55718558	0.84[AFR][1000 genomes]
rs57609264	0.97[ASN][1000 genomes]
rs58237209	0.94[ASN][1000 genomes]
rs59333025	0.87[ASN][1000 genomes]
rs60167419	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs61366591	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6466822	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6466823	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6944276	0.93[ASN][1000 genomes]
rs6946316	0.85[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs6947975	0.93[ASN][1000 genomes]
rs6949163	0.83[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs6949761	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6956324	0.93[ASN][1000 genomes]
rs6957059	0.98[ASN][1000 genomes]
rs6957093	0.98[ASN][1000 genomes]
rs724336	0.96[ASN][1000 genomes]
rs73368683	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs73368688	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73368692	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73370544	0.98[ASN][1000 genomes]
rs73370545	0.98[ASN][1000 genomes]
rs73370570	0.96[ASN][1000 genomes]
rs73707160	0.97[ASN][1000 genomes]
rs73709915	0.85[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs73709922	0.98[ASN][1000 genomes]
rs7803517	0.86[ASN][1000 genomes]
rs7803852	0.89[ASN][1000 genomes]
rs886475	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888522	chr7:79402551-79619012	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv607675	chr7:79495456-79519229	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79506200-79507800	Enhancers	NHLF	lung
2	chr7:79507200-79507600	Enhancers	Pancreatic Islets	Pancreatic Islet

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