Variant report

Variant	rs2707896
Chromosome Location	chr7:79506536-79506537
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 103 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs1008311	0.89[ASN][1000 genomes]
rs1009198	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1009199	0.89[ASN][1000 genomes]
rs10229737	0.88[EUR][1000 genomes]
rs10256778	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10486911	0.91[ASN][1000 genomes]
rs10486912	0.87[ASN][1000 genomes]
rs11974696	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11975054	0.89[ASN][1000 genomes]
rs11975127	0.89[ASN][1000 genomes]
rs12112783	0.91[ASN][1000 genomes]
rs12113482	0.89[ASN][1000 genomes]
rs12113913	0.87[ASN][1000 genomes]
rs12155353	0.90[EUR][1000 genomes]
rs12531185	0.89[ASN][1000 genomes]
rs1293091	0.81[ASN][1000 genomes]
rs1293109	0.81[ASN][1000 genomes]
rs1293110	0.80[ASN][1000 genomes]
rs1293112	0.81[ASN][1000 genomes]
rs1293113	0.81[ASN][1000 genomes]
rs1293115	0.81[ASN][1000 genomes]
rs1297413	0.81[ASN][1000 genomes]
rs1319297	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16886703	0.85[ASN][1000 genomes]
rs16886704	0.85[ASN][1000 genomes]
rs17152972	0.89[ASN][1000 genomes]
rs17152982	0.91[ASN][1000 genomes]
rs17152992	0.91[ASN][1000 genomes]
rs17153038	0.90[ASN][1000 genomes]
rs17153067	0.87[ASN][1000 genomes]
rs17153072	0.87[ASN][1000 genomes]
rs17153087	0.85[ASN][1000 genomes]
rs17153094	0.85[ASN][1000 genomes]
rs17793556	0.89[ASN][1000 genomes]
rs1859196	0.88[EUR][1000 genomes]
rs1922725	0.81[ASN][1000 genomes]
rs1922726	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1922728	0.80[ASN][1000 genomes]
rs1922731	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1985747	0.86[ASN][1000 genomes]
rs1985821	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2107408	0.91[ASN][1000 genomes]
rs2214430	0.96[EUR][1000 genomes]
rs2246996	0.80[ASN][1000 genomes]
rs2428627	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2525815	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2525816	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2525820	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2525822	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2525825	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2525826	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2525827	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2525835	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2707882	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2707883	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2707886	0.81[ASN][1000 genomes]
rs2707887	0.81[ASN][1000 genomes]
rs2707911	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2707920	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2707922	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2714653	0.81[ASN][1000 genomes]
rs2714655	0.81[ASN][1000 genomes]
rs2714656	0.80[ASN][1000 genomes]
rs2714661	0.80[ASN][1000 genomes]
rs2714662	0.81[ASN][1000 genomes]
rs2714664	0.80[ASN][1000 genomes]
rs2714695	0.81[ASN][1000 genomes]
rs2714696	0.81[ASN][1000 genomes]
rs333209	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs333210	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs333211	0.90[ASN][1000 genomes]
rs4352782	0.86[ASN][1000 genomes]
rs4460297	0.86[ASN][1000 genomes]
rs57609264	0.89[ASN][1000 genomes]
rs58237209	0.86[ASN][1000 genomes]
rs60424611	0.91[ASN][1000 genomes]
rs61366591	0.89[ASN][1000 genomes]
rs6466823	0.89[ASN][1000 genomes]
rs6944276	0.85[ASN][1000 genomes]
rs6946316	0.89[ASN][1000 genomes]
rs6946466	0.88[EUR][1000 genomes]
rs6947975	0.85[ASN][1000 genomes]
rs6949163	0.89[ASN][1000 genomes]
rs6949761	0.91[ASN][1000 genomes]
rs6956324	0.85[ASN][1000 genomes]
rs6957059	0.90[ASN][1000 genomes]
rs6957093	0.90[ASN][1000 genomes]
rs724336	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs73368688	0.91[ASN][1000 genomes]
rs73368692	0.91[ASN][1000 genomes]
rs73370544	0.90[ASN][1000 genomes]
rs73370545	0.90[ASN][1000 genomes]
rs73370570	0.87[ASN][1000 genomes]
rs73707160	0.89[ASN][1000 genomes]
rs73709915	0.89[ASN][1000 genomes]
rs73709922	0.90[ASN][1000 genomes]
rs757191	0.87[EUR][1000 genomes]
rs7803517	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7803852	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs886475	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs981490	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888522	chr7:79402551-79619012	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv607675	chr7:79495456-79519229	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79505600-79506600	ZNF genes & repeats	Dnd41	blood
2	chr7:79505800-79506600	Enhancers	Osteobl	bone
3	chr7:79505800-79507400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr7:79506000-79506800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr7:79506200-79506600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr7:79506200-79506600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr7:79506200-79506600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr7:79506200-79506600	Flanking Active TSS	Hela-S3	cervix
9	chr7:79506200-79507400	Enhancers	Fetal Heart	heart
10	chr7:79506200-79507800	Enhancers	NHLF	lung
11	chr7:79506400-79506600	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin

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