Variant report

Variant	rs2525835
Chromosome Location	chr7:79527088-79527089
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:79522831..79524526-chr7:79524961..79527808,2	K562	blood:

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs1008311	0.90[ASN][1000 genomes]
rs1009198	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1009199	0.90[ASN][1000 genomes]
rs10229737	0.91[EUR][1000 genomes]
rs10249341	0.81[EUR][1000 genomes]
rs10256778	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10486911	0.93[ASN][1000 genomes]
rs10486912	0.91[ASN][1000 genomes]
rs11974696	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11975054	0.90[ASN][1000 genomes]
rs11975127	0.90[ASN][1000 genomes]
rs12112783	0.93[ASN][1000 genomes]
rs12113482	0.90[ASN][1000 genomes]
rs12113913	0.89[ASN][1000 genomes]
rs12155353	0.94[EUR][1000 genomes]
rs12531185	0.90[ASN][1000 genomes]
rs1293091	0.83[ASN][1000 genomes]
rs1293109	0.83[ASN][1000 genomes]
rs1293110	0.81[ASN][1000 genomes]
rs1293112	0.83[ASN][1000 genomes]
rs1293113	0.83[ASN][1000 genomes]
rs1293115	0.83[ASN][1000 genomes]
rs1297413	0.83[ASN][1000 genomes]
rs1319297	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16886703	0.89[ASN][1000 genomes]
rs16886704	0.89[ASN][1000 genomes]
rs17152972	0.90[ASN][1000 genomes]
rs17152982	0.93[ASN][1000 genomes]
rs17152992	0.93[ASN][1000 genomes]
rs17153038	0.94[ASN][1000 genomes]
rs17153067	0.91[ASN][1000 genomes]
rs17153072	0.91[ASN][1000 genomes]
rs17153087	0.89[ASN][1000 genomes]
rs17153094	0.89[ASN][1000 genomes]
rs17793556	0.90[ASN][1000 genomes]
rs1859196	0.92[EUR][1000 genomes]
rs1922725	0.83[ASN][1000 genomes]
rs1922726	0.83[ASN][1000 genomes]
rs1922728	0.81[ASN][1000 genomes]
rs1922731	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1985747	0.87[ASN][1000 genomes]
rs1985821	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2107408	0.93[ASN][1000 genomes]
rs2214430	1.00[EUR][1000 genomes]
rs2246996	0.81[ASN][1000 genomes]
rs2428627	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2525815	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2525816	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2525820	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2525822	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2525825	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2525826	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2525827	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2707882	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2707883	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2707886	0.83[ASN][1000 genomes]
rs2707887	0.83[ASN][1000 genomes]
rs2707896	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2707911	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2707920	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2707922	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2714653	0.83[ASN][1000 genomes]
rs2714655	0.83[ASN][1000 genomes]
rs2714656	0.81[ASN][1000 genomes]
rs2714661	0.81[ASN][1000 genomes]
rs2714662	0.83[ASN][1000 genomes]
rs2714664	0.81[ASN][1000 genomes]
rs2714695	0.83[ASN][1000 genomes]
rs2714696	0.83[ASN][1000 genomes]
rs333209	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs333210	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs333211	0.94[ASN][1000 genomes]
rs4352782	0.90[ASN][1000 genomes]
rs4460297	0.90[ASN][1000 genomes]
rs57609264	0.90[ASN][1000 genomes]
rs58237209	0.90[ASN][1000 genomes]
rs59333025	0.81[ASN][1000 genomes]
rs60424611	0.93[ASN][1000 genomes]
rs61366591	0.90[ASN][1000 genomes]
rs6466823	0.90[ASN][1000 genomes]
rs6944276	0.89[ASN][1000 genomes]
rs6946316	0.90[ASN][1000 genomes]
rs6946466	0.92[EUR][1000 genomes]
rs6947975	0.89[ASN][1000 genomes]
rs6949163	0.90[ASN][1000 genomes]
rs6949761	0.93[ASN][1000 genomes]
rs6956324	0.89[ASN][1000 genomes]
rs6957059	0.94[ASN][1000 genomes]
rs6957093	0.94[ASN][1000 genomes]
rs724336	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs73368688	0.93[ASN][1000 genomes]
rs73368692	0.93[ASN][1000 genomes]
rs73370544	0.94[ASN][1000 genomes]
rs73370545	0.94[ASN][1000 genomes]
rs73370570	0.91[ASN][1000 genomes]
rs73707160	0.90[ASN][1000 genomes]
rs73709915	0.90[ASN][1000 genomes]
rs73709922	0.94[ASN][1000 genomes]
rs757191	0.91[EUR][1000 genomes]
rs7803517	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7803852	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs886475	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs981490	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888522	chr7:79402551-79619012	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79526600-79527800	Enhancers	Pancreatic Islets	Pancreatic Islet
2	chr7:79527000-79527600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr7:79527000-79528000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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