Variant report

Variant	rs73368692
Chromosome Location	chr7:79506116-79506117
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 106 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:104)

rs_ID	r²[population]
rs1005245	0.81[EUR][1000 genomes]
rs1008311	0.97[ASN][1000 genomes]
rs1009198	0.91[ASN][1000 genomes]
rs1009199	0.83[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs10256778	0.89[ASN][1000 genomes]
rs10486911	1.00[ASN][1000 genomes]
rs10486912	0.96[ASN][1000 genomes]
rs11974696	0.89[ASN][1000 genomes]
rs11975054	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11975127	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12112743	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12112783	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12113482	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12113913	0.83[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs12531118	0.97[EUR][1000 genomes]
rs12531172	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12531185	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12533720	1.00[EUR][1000 genomes]
rs12539252	0.92[EUR][1000 genomes]
rs1319297	0.91[ASN][1000 genomes]
rs16886703	0.93[ASN][1000 genomes]
rs16886704	0.93[ASN][1000 genomes]
rs17152926	0.83[ASN][1000 genomes]
rs17152944	0.80[ASN][1000 genomes]
rs17152972	0.97[ASN][1000 genomes]
rs17152982	1.00[ASN][1000 genomes]
rs17152992	1.00[ASN][1000 genomes]
rs17153038	0.98[ASN][1000 genomes]
rs17153067	0.96[ASN][1000 genomes]
rs17153072	0.96[ASN][1000 genomes]
rs17153087	0.93[ASN][1000 genomes]
rs17153094	0.93[ASN][1000 genomes]
rs17204415	0.98[EUR][1000 genomes]
rs17204926	1.00[EUR][1000 genomes]
rs17207519	0.97[EUR][1000 genomes]
rs17793556	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17793605	0.98[EUR][1000 genomes]
rs17793671	0.98[EUR][1000 genomes]
rs17799797	0.97[EUR][1000 genomes]
rs1922731	0.93[ASN][1000 genomes]
rs1985747	0.94[ASN][1000 genomes]
rs1985821	0.90[ASN][1000 genomes]
rs2107408	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2428627	0.91[ASN][1000 genomes]
rs2525815	0.91[ASN][1000 genomes]
rs2525816	0.91[ASN][1000 genomes]
rs2525820	0.91[ASN][1000 genomes]
rs2525822	0.91[ASN][1000 genomes]
rs2525825	0.91[ASN][1000 genomes]
rs2525826	0.94[ASN][1000 genomes]
rs2525827	0.94[ASN][1000 genomes]
rs2525835	0.93[ASN][1000 genomes]
rs2707882	0.91[ASN][1000 genomes]
rs2707883	0.91[ASN][1000 genomes]
rs2707896	0.91[ASN][1000 genomes]
rs2707911	0.91[ASN][1000 genomes]
rs2707920	0.93[ASN][1000 genomes]
rs2707922	0.93[ASN][1000 genomes]
rs333209	0.87[ASN][1000 genomes]
rs333210	0.87[ASN][1000 genomes]
rs333211	0.87[ASN][1000 genomes]
rs4352782	0.94[ASN][1000 genomes]
rs4394329	0.83[ASN][1000 genomes]
rs4460297	0.94[ASN][1000 genomes]
rs55653798	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55698421	0.90[EUR][1000 genomes]
rs55718558	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56036430	0.97[EUR][1000 genomes]
rs56107852	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56306195	0.98[EUR][1000 genomes]
rs56349627	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs57609264	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58237209	0.94[ASN][1000 genomes]
rs59333025	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs60424611	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61366591	0.82[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs6466822	0.81[AFR][1000 genomes]
rs6466823	0.85[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs6944276	0.93[ASN][1000 genomes]
rs6946316	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6947975	0.93[ASN][1000 genomes]
rs6949163	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6949761	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6954060	0.97[EUR][1000 genomes]
rs6956324	0.93[ASN][1000 genomes]
rs6957059	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6957093	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs724336	0.96[ASN][1000 genomes]
rs73368683	0.81[AFR][1000 genomes]
rs73368688	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73370529	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73370544	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73370545	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73370570	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73383049	0.92[EUR][1000 genomes]
rs73707160	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73709915	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73709922	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73709923	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7783110	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7803517	0.86[ASN][1000 genomes]
rs7803852	0.89[ASN][1000 genomes]
rs886475	0.90[ASN][1000 genomes]
rs9785059	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888522	chr7:79402551-79619012	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv607675	chr7:79495456-79519229	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79505600-79506600	ZNF genes & repeats	Dnd41	blood
2	chr7:79505800-79506400	Enhancers	A549	lung
3	chr7:79505800-79506600	Enhancers	Osteobl	bone
4	chr7:79505800-79507400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr7:79506000-79506200	Enhancers	Hela-S3	cervix
6	chr7:79506000-79506800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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