Variant report

Variant	rs1005245
Chromosome Location	chr7:79579320-79579321
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12531118	0.84[EUR][1000 genomes]
rs12531172	0.84[EUR][1000 genomes]
rs12533720	0.81[EUR][1000 genomes]
rs17204926	0.81[EUR][1000 genomes]
rs17207519	0.84[EUR][1000 genomes]
rs17799797	0.84[EUR][1000 genomes]
rs2107408	0.81[EUR][1000 genomes]
rs55653798	0.84[EUR][1000 genomes]
rs56107852	0.84[EUR][1000 genomes]
rs56349627	0.84[EUR][1000 genomes]
rs6949761	0.81[EUR][1000 genomes]
rs6954060	0.84[EUR][1000 genomes]
rs6957059	0.84[EUR][1000 genomes]
rs6957093	0.84[EUR][1000 genomes]
rs73368692	0.81[EUR][1000 genomes]
rs73370529	0.84[EUR][1000 genomes]
rs73370544	0.84[EUR][1000 genomes]
rs73370545	0.84[EUR][1000 genomes]
rs73370570	0.89[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs73709922	0.84[EUR][1000 genomes]
rs73709923	0.84[EUR][1000 genomes]
rs7783110	0.84[EUR][1000 genomes]
rs9785059	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888522	chr7:79402551-79619012	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1032480	chr7:79558011-79625086	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79579200-79579600	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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