Variant report

Variant	rs6957059
Chromosome Location	chr7:79523066-79523067
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:79522831..79524526-chr7:79524961..79527808,2	K562	blood:

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs1005245	0.84[EUR][1000 genomes]
rs1008311	0.96[ASN][1000 genomes]
rs1009198	0.90[ASN][1000 genomes]
rs1009199	0.96[ASN][1000 genomes]
rs10256778	0.90[ASN][1000 genomes]
rs10486911	0.98[ASN][1000 genomes]
rs10486912	0.97[ASN][1000 genomes]
rs11974696	0.90[ASN][1000 genomes]
rs11975054	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11975127	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12112743	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12112783	0.98[ASN][1000 genomes]
rs12113482	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12113913	0.94[ASN][1000 genomes]
rs12531118	1.00[EUR][1000 genomes]
rs12531172	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12531185	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12533720	0.97[EUR][1000 genomes]
rs12539252	0.89[EUR][1000 genomes]
rs1319297	0.90[ASN][1000 genomes]
rs16886703	0.94[ASN][1000 genomes]
rs16886704	0.94[ASN][1000 genomes]
rs17152926	0.82[ASN][1000 genomes]
rs17152972	0.96[ASN][1000 genomes]
rs17152982	0.98[ASN][1000 genomes]
rs17152992	0.98[ASN][1000 genomes]
rs17153038	1.00[ASN][1000 genomes]
rs17153067	0.97[ASN][1000 genomes]
rs17153072	0.97[ASN][1000 genomes]
rs17153087	0.94[ASN][1000 genomes]
rs17153094	0.94[ASN][1000 genomes]
rs17204415	0.95[EUR][1000 genomes]
rs17204926	0.97[EUR][1000 genomes]
rs17207519	1.00[EUR][1000 genomes]
rs17793556	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17793605	0.95[EUR][1000 genomes]
rs17793671	0.95[EUR][1000 genomes]
rs17799797	1.00[EUR][1000 genomes]
rs1922731	0.94[ASN][1000 genomes]
rs1985747	0.93[ASN][1000 genomes]
rs1985821	0.89[ASN][1000 genomes]
rs2107408	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2428627	0.90[ASN][1000 genomes]
rs2525815	0.90[ASN][1000 genomes]
rs2525816	0.90[ASN][1000 genomes]
rs2525820	0.90[ASN][1000 genomes]
rs2525822	0.90[ASN][1000 genomes]
rs2525825	0.90[ASN][1000 genomes]
rs2525826	0.93[ASN][1000 genomes]
rs2525827	0.93[ASN][1000 genomes]
rs2525835	0.94[ASN][1000 genomes]
rs2707882	0.90[ASN][1000 genomes]
rs2707883	0.90[ASN][1000 genomes]
rs2707896	0.90[ASN][1000 genomes]
rs2707911	0.90[ASN][1000 genomes]
rs2707920	0.94[ASN][1000 genomes]
rs2707922	0.94[ASN][1000 genomes]
rs333209	0.89[ASN][1000 genomes]
rs333210	0.89[ASN][1000 genomes]
rs333211	0.89[ASN][1000 genomes]
rs4352782	0.95[ASN][1000 genomes]
rs4394329	0.82[ASN][1000 genomes]
rs4460297	0.95[ASN][1000 genomes]
rs55653798	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55698421	0.87[EUR][1000 genomes]
rs55718558	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56036430	0.93[EUR][1000 genomes]
rs56107852	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56306195	0.95[EUR][1000 genomes]
rs56349627	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57609264	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58237209	0.95[ASN][1000 genomes]
rs59333025	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs60424611	0.98[ASN][1000 genomes]
rs61366591	0.96[ASN][1000 genomes]
rs6466823	0.96[ASN][1000 genomes]
rs6944276	0.94[ASN][1000 genomes]
rs6946316	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6947975	0.94[ASN][1000 genomes]
rs6949163	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6949761	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6954060	1.00[EUR][1000 genomes]
rs6956324	0.94[ASN][1000 genomes]
rs6957093	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs724336	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs73368688	0.98[ASN][1000 genomes]
rs73368692	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73370529	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73370544	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73370545	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73370570	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73383049	0.89[EUR][1000 genomes]
rs73707160	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73709915	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73709922	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73709923	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7783110	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7803517	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7803852	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs886475	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9785059	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888522	chr7:79402551-79619012	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79522400-79524000	Enhancers	Muscle Satellite Cultured Cells	--
2	chr7:79522600-79524000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr7:79522600-79524400	Enhancers	NHLF	lung

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