Variant report

Variant	rs333209
Chromosome Location	chr7:79553137-79553138
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs1008311	0.84[ASN][1000 genomes]
rs1009198	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1009199	0.84[ASN][1000 genomes]
rs10229737	0.80[EUR][1000 genomes]
rs10256778	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10486911	0.87[ASN][1000 genomes]
rs10486912	0.91[ASN][1000 genomes]
rs11974696	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11975054	0.84[ASN][1000 genomes]
rs11975127	0.84[ASN][1000 genomes]
rs12112783	0.87[ASN][1000 genomes]
rs12113482	0.84[ASN][1000 genomes]
rs12113913	0.83[ASN][1000 genomes]
rs12155353	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12531185	0.84[ASN][1000 genomes]
rs1293091	0.82[EUR][1000 genomes]
rs1293109	0.89[EUR][1000 genomes]
rs1293111	0.89[EUR][1000 genomes]
rs1319297	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16886703	0.94[ASN][1000 genomes]
rs16886704	0.94[ASN][1000 genomes]
rs17152972	0.84[ASN][1000 genomes]
rs17152982	0.87[ASN][1000 genomes]
rs17152992	0.87[ASN][1000 genomes]
rs17153038	0.89[ASN][1000 genomes]
rs17153067	0.91[ASN][1000 genomes]
rs17153072	0.91[ASN][1000 genomes]
rs17153087	0.94[ASN][1000 genomes]
rs17153094	0.94[ASN][1000 genomes]
rs17793556	0.84[ASN][1000 genomes]
rs1859196	0.81[EUR][1000 genomes]
rs1922725	0.82[EUR][1000 genomes]
rs1922726	0.90[EUR][1000 genomes]
rs1922731	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1985747	0.82[ASN][1000 genomes]
rs1985821	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2107408	0.87[ASN][1000 genomes]
rs2214430	0.88[EUR][1000 genomes]
rs2428627	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2525815	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2525816	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2525820	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2525822	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2525825	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2525826	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2525827	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2525835	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2707882	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2707883	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2707887	0.87[EUR][1000 genomes]
rs2707896	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2707911	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2707920	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2707922	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2714695	0.82[EUR][1000 genomes]
rs2714696	0.82[EUR][1000 genomes]
rs333210	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs333211	1.00[ASN][1000 genomes]
rs4352782	0.93[ASN][1000 genomes]
rs4460297	0.93[ASN][1000 genomes]
rs57609264	0.84[ASN][1000 genomes]
rs58237209	0.93[ASN][1000 genomes]
rs60424611	0.87[ASN][1000 genomes]
rs61366591	0.84[ASN][1000 genomes]
rs6466823	0.84[ASN][1000 genomes]
rs6944276	0.94[ASN][1000 genomes]
rs6946316	0.84[ASN][1000 genomes]
rs6946466	0.81[EUR][1000 genomes]
rs6947975	0.94[ASN][1000 genomes]
rs6949163	0.84[ASN][1000 genomes]
rs6949761	0.87[ASN][1000 genomes]
rs6956324	0.94[ASN][1000 genomes]
rs6957059	0.89[ASN][1000 genomes]
rs6957093	0.89[ASN][1000 genomes]
rs724336	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs73368688	0.87[ASN][1000 genomes]
rs73368692	0.87[ASN][1000 genomes]
rs73370544	0.89[ASN][1000 genomes]
rs73370545	0.89[ASN][1000 genomes]
rs73370570	0.91[ASN][1000 genomes]
rs73707160	0.84[ASN][1000 genomes]
rs73709915	0.84[ASN][1000 genomes]
rs73709922	0.89[ASN][1000 genomes]
rs7803517	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7803852	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs886475	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.85[AFR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888522	chr7:79402551-79619012	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79551800-79554600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr7:79552400-79554800	Enhancers	NHLF	lung
3	chr7:79552600-79553400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr7:79552600-79554000	Weak transcription	Dnd41	blood
5	chr7:79552800-79553800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr7:79552800-79554400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr7:79553000-79555200	Enhancers	Muscle Satellite Cultured Cells	--

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