Variant report

Variant	rs12113482
Chromosome Location	chr7:79504849-79504850
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 127 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:125)

rs_ID	r²[population]
rs1008311	1.00[ASN][1000 genomes]
rs1009198	0.94[ASN][1000 genomes]
rs1009199	1.00[ASN][1000 genomes]
rs10256778	0.86[ASN][1000 genomes]
rs10486911	0.97[ASN][1000 genomes]
rs10486912	0.93[ASN][1000 genomes]
rs11974696	0.86[ASN][1000 genomes]
rs11975054	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11975127	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12112743	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12112783	0.81[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs12113913	0.99[ASN][1000 genomes]
rs12531118	0.95[EUR][1000 genomes]
rs12531172	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12531185	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12531391	0.81[EUR][1000 genomes]
rs12531419	0.81[EUR][1000 genomes]
rs12533720	0.98[EUR][1000 genomes]
rs12539252	0.93[EUR][1000 genomes]
rs1293091	0.81[ASN][1000 genomes]
rs1293109	0.81[ASN][1000 genomes]
rs1293110	0.80[ASN][1000 genomes]
rs1293112	0.81[ASN][1000 genomes]
rs1293113	0.81[ASN][1000 genomes]
rs1293115	0.81[ASN][1000 genomes]
rs1297413	0.81[ASN][1000 genomes]
rs1319297	0.94[ASN][1000 genomes]
rs16886703	0.90[ASN][1000 genomes]
rs16886704	0.90[ASN][1000 genomes]
rs17152926	0.86[ASN][1000 genomes]
rs17152944	0.83[ASN][1000 genomes]
rs17152972	1.00[ASN][1000 genomes]
rs17152982	0.97[ASN][1000 genomes]
rs17152992	0.97[ASN][1000 genomes]
rs17153038	0.96[ASN][1000 genomes]
rs17153067	0.93[ASN][1000 genomes]
rs17153072	0.93[ASN][1000 genomes]
rs17153087	0.90[ASN][1000 genomes]
rs17153094	0.90[ASN][1000 genomes]
rs17204415	1.00[EUR][1000 genomes]
rs17204926	0.98[EUR][1000 genomes]
rs17207519	0.95[EUR][1000 genomes]
rs17793556	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17793605	1.00[EUR][1000 genomes]
rs17793671	1.00[EUR][1000 genomes]
rs17799797	0.95[EUR][1000 genomes]
rs1922725	0.81[ASN][1000 genomes]
rs1922726	0.81[ASN][1000 genomes]
rs1922728	0.80[ASN][1000 genomes]
rs1922731	0.90[ASN][1000 genomes]
rs1985747	0.97[ASN][1000 genomes]
rs1985821	0.93[ASN][1000 genomes]
rs2107408	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2246996	0.80[ASN][1000 genomes]
rs2428627	0.94[ASN][1000 genomes]
rs2525815	0.94[ASN][1000 genomes]
rs2525816	0.94[ASN][1000 genomes]
rs2525820	0.94[ASN][1000 genomes]
rs2525822	0.94[ASN][1000 genomes]
rs2525825	0.94[ASN][1000 genomes]
rs2525826	0.91[ASN][1000 genomes]
rs2525827	0.91[ASN][1000 genomes]
rs2525835	0.90[ASN][1000 genomes]
rs2707882	0.94[ASN][1000 genomes]
rs2707883	0.94[ASN][1000 genomes]
rs2707886	0.81[ASN][1000 genomes]
rs2707887	0.81[ASN][1000 genomes]
rs2707896	0.89[ASN][1000 genomes]
rs2707911	0.94[ASN][1000 genomes]
rs2707920	0.90[ASN][1000 genomes]
rs2707922	0.90[ASN][1000 genomes]
rs2714653	0.81[ASN][1000 genomes]
rs2714655	0.81[ASN][1000 genomes]
rs2714656	0.80[ASN][1000 genomes]
rs2714661	0.80[ASN][1000 genomes]
rs2714662	0.81[ASN][1000 genomes]
rs2714664	0.80[ASN][1000 genomes]
rs2714695	0.81[ASN][1000 genomes]
rs2714696	0.81[ASN][1000 genomes]
rs333209	0.84[ASN][1000 genomes]
rs333210	0.84[ASN][1000 genomes]
rs333211	0.84[ASN][1000 genomes]
rs4352782	0.91[ASN][1000 genomes]
rs4394329	0.86[ASN][1000 genomes]
rs4460297	0.91[ASN][1000 genomes]
rs55653798	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55698421	0.92[EUR][1000 genomes]
rs55718558	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55923193	0.81[EUR][1000 genomes]
rs56036430	0.98[EUR][1000 genomes]
rs56107852	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56306195	1.00[EUR][1000 genomes]
rs56349627	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57609264	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58237209	0.91[ASN][1000 genomes]
rs59333025	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60424611	0.81[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs61366591	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6466823	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6944276	0.90[ASN][1000 genomes]
rs6946316	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6947975	0.90[ASN][1000 genomes]
rs6949163	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6949761	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6954060	0.95[EUR][1000 genomes]
rs6956324	0.90[ASN][1000 genomes]
rs6957059	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6957093	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs724336	0.93[ASN][1000 genomes]
rs73368688	0.81[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs73368692	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73370529	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73370544	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73370545	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73370570	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73383049	0.93[EUR][1000 genomes]
rs73707160	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73709915	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73709922	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73709923	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7783110	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7803517	0.83[ASN][1000 genomes]
rs7803852	0.86[ASN][1000 genomes]
rs886475	0.87[ASN][1000 genomes]
rs9785059	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888522	chr7:79402551-79619012	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv607675	chr7:79495456-79519229	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79498200-79505600	Weak transcription	Dnd41	blood

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