Variant report

Variant	rs17204926
Chromosome Location	chr7:79507348-79507349
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1005245	0.81[EUR][1000 genomes]
rs11975054	0.98[EUR][1000 genomes]
rs11975127	0.98[EUR][1000 genomes]
rs12112743	0.90[EUR][1000 genomes]
rs12113482	0.98[EUR][1000 genomes]
rs12531118	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12531172	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12531185	0.90[EUR][1000 genomes]
rs12533720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12539252	0.92[EUR][1000 genomes]
rs17204415	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17207519	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17793556	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17793605	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17793671	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17799797	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2107408	1.00[EUR][1000 genomes]
rs55653798	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55698421	0.90[EUR][1000 genomes]
rs55718558	0.91[EUR][1000 genomes]
rs56036430	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56107852	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56306195	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56349627	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs57609264	0.98[EUR][1000 genomes]
rs6946316	0.98[EUR][1000 genomes]
rs6949163	0.97[EUR][1000 genomes]
rs6949761	1.00[EUR][1000 genomes]
rs6954060	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6957059	0.97[EUR][1000 genomes]
rs6957093	0.97[EUR][1000 genomes]
rs73368692	1.00[EUR][1000 genomes]
rs73370529	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73370544	0.97[EUR][1000 genomes]
rs73370545	0.97[EUR][1000 genomes]
rs73370570	0.97[EUR][1000 genomes]
rs73383049	0.92[EUR][1000 genomes]
rs73707160	0.98[EUR][1000 genomes]
rs73709915	0.98[EUR][1000 genomes]
rs73709922	0.97[EUR][1000 genomes]
rs73709923	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7783110	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9785059	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888522	chr7:79402551-79619012	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv607675	chr7:79495456-79519229	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17204926	SNORA14A	cis	parietal	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79505800-79507400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr7:79506200-79507400	Enhancers	Fetal Heart	heart
3	chr7:79506200-79507800	Enhancers	NHLF	lung
4	chr7:79506800-79507400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr7:79507200-79507600	Enhancers	Pancreatic Islets	Pancreatic Islet

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