Variant report

Variant	rs55718558
Chromosome Location	chr7:79505635-79505636
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1009199	0.82[AFR][1000 genomes]
rs11975054	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11975127	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12112743	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12112783	0.84[AFR][1000 genomes]
rs12113482	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12113913	0.82[AFR][1000 genomes]
rs12531118	0.88[EUR][1000 genomes]
rs12531172	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12531185	0.85[EUR][1000 genomes]
rs12533720	0.91[EUR][1000 genomes]
rs12539252	0.86[EUR][1000 genomes]
rs17204415	0.93[EUR][1000 genomes]
rs17204926	0.91[EUR][1000 genomes]
rs17207519	0.88[EUR][1000 genomes]
rs17793556	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17793605	0.93[EUR][1000 genomes]
rs17793671	0.93[EUR][1000 genomes]
rs17799797	0.88[EUR][1000 genomes]
rs2107408	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55653798	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55698421	0.85[EUR][1000 genomes]
rs56036430	0.91[EUR][1000 genomes]
rs56107852	0.88[EUR][1000 genomes]
rs56306195	0.93[EUR][1000 genomes]
rs56349627	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs57609264	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59333025	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs60424611	0.84[AFR][1000 genomes]
rs61366591	0.81[AFR][1000 genomes]
rs6466823	0.84[AFR][1000 genomes]
rs6946316	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6949163	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6949761	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6954060	0.88[EUR][1000 genomes]
rs6957059	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6957093	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73368688	0.84[AFR][1000 genomes]
rs73368692	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73370529	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73370544	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73370545	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73370570	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73383049	0.86[EUR][1000 genomes]
rs73707160	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73709915	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73709922	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73709923	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7783110	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9785059	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888522	chr7:79402551-79619012	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv607675	chr7:79495456-79519229	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79505600-79506600	ZNF genes & repeats	Dnd41	blood

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