Variant report

Variant	rs12539252
Chromosome Location	chr7:79455889-79455890
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11975054	0.93[EUR][1000 genomes]
rs11975127	0.93[EUR][1000 genomes]
rs12112743	0.85[EUR][1000 genomes]
rs12113482	0.93[EUR][1000 genomes]
rs12531118	0.89[EUR][1000 genomes]
rs12531172	0.89[EUR][1000 genomes]
rs12531185	0.85[EUR][1000 genomes]
rs12531391	0.87[EUR][1000 genomes]
rs12531419	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12533720	0.92[EUR][1000 genomes]
rs17204415	0.93[EUR][1000 genomes]
rs17204926	0.92[EUR][1000 genomes]
rs17207519	0.89[EUR][1000 genomes]
rs17793556	0.93[EUR][1000 genomes]
rs17793605	0.93[EUR][1000 genomes]
rs17793671	0.93[EUR][1000 genomes]
rs17799797	0.89[EUR][1000 genomes]
rs2107408	0.92[EUR][1000 genomes]
rs55653798	0.89[EUR][1000 genomes]
rs55698421	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55718558	0.86[EUR][1000 genomes]
rs55923193	0.87[EUR][1000 genomes]
rs56036430	0.92[EUR][1000 genomes]
rs56107852	0.89[EUR][1000 genomes]
rs56306195	0.93[EUR][1000 genomes]
rs56349627	0.89[EUR][1000 genomes]
rs57609264	0.93[EUR][1000 genomes]
rs6946316	0.93[EUR][1000 genomes]
rs6949163	0.93[EUR][1000 genomes]
rs6949761	0.92[EUR][1000 genomes]
rs6954060	0.89[EUR][1000 genomes]
rs6957059	0.89[EUR][1000 genomes]
rs6957093	0.89[EUR][1000 genomes]
rs73368692	0.92[EUR][1000 genomes]
rs73370529	0.89[EUR][1000 genomes]
rs73370544	0.89[EUR][1000 genomes]
rs73370545	0.89[EUR][1000 genomes]
rs73370570	0.89[EUR][1000 genomes]
rs73383049	1.00[EUR][1000 genomes]
rs73707160	0.93[EUR][1000 genomes]
rs73709915	0.93[EUR][1000 genomes]
rs73709922	0.89[EUR][1000 genomes]
rs73709923	0.89[EUR][1000 genomes]
rs7783110	0.89[EUR][1000 genomes]
rs9785059	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	esv2829876	chr7:79355196-79483480	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv888521	chr7:79371206-79483480	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv888522	chr7:79402551-79619012	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv5808	chr7:79453632-79502455	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79449800-79457400	Weak transcription	NHLF	lung
2	chr7:79450400-79457000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr7:79455200-79456000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links