Variant report

Variant	rs12531172
Chromosome Location	chr7:79554429-79554430
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1005245	0.84[EUR][1000 genomes]
rs11975054	0.95[EUR][1000 genomes]
rs11975127	0.95[EUR][1000 genomes]
rs12112743	0.87[EUR][1000 genomes]
rs12113482	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12531118	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12531185	0.87[EUR][1000 genomes]
rs12533720	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12539252	0.89[EUR][1000 genomes]
rs17204415	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17204926	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17207519	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17793556	0.95[EUR][1000 genomes]
rs17793605	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17793671	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17799797	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2107408	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55653798	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55698421	0.87[EUR][1000 genomes]
rs55718558	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56036430	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56107852	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56306195	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56349627	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57609264	0.95[EUR][1000 genomes]
rs6946316	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6949163	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6949761	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6954060	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6957059	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6957093	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73368692	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73370529	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73370544	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73370545	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73370570	1.00[EUR][1000 genomes]
rs73383049	0.89[EUR][1000 genomes]
rs73707160	0.95[EUR][1000 genomes]
rs73709915	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73709922	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73709923	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7783110	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9785059	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888522	chr7:79402551-79619012	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79551800-79554600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr7:79552400-79554800	Enhancers	NHLF	lung
3	chr7:79553000-79555200	Enhancers	Muscle Satellite Cultured Cells	--
4	chr7:79553200-79554800	Enhancers	Osteobl	bone
5	chr7:79554400-79554800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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