Variant report

Variant	rs59333025
Chromosome Location	chr7:79504767-79504768
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs1008311	0.90[ASN][1000 genomes]
rs1009198	0.85[ASN][1000 genomes]
rs1009199	0.90[ASN][1000 genomes]
rs10486911	0.87[ASN][1000 genomes]
rs10486912	0.83[ASN][1000 genomes]
rs11975054	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11975127	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12112743	0.89[AMR][1000 genomes]
rs12112783	0.87[ASN][1000 genomes]
rs12113482	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12113913	0.89[ASN][1000 genomes]
rs12531185	0.90[ASN][1000 genomes]
rs1319297	0.85[ASN][1000 genomes]
rs16886703	0.81[ASN][1000 genomes]
rs16886704	0.81[ASN][1000 genomes]
rs17152972	0.90[ASN][1000 genomes]
rs17152982	0.87[ASN][1000 genomes]
rs17152992	0.87[ASN][1000 genomes]
rs17153038	0.86[ASN][1000 genomes]
rs17153067	0.83[ASN][1000 genomes]
rs17153072	0.83[ASN][1000 genomes]
rs17153087	0.81[ASN][1000 genomes]
rs17153094	0.81[ASN][1000 genomes]
rs17204415	0.81[EUR][1000 genomes]
rs17793556	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17793605	0.81[EUR][1000 genomes]
rs17793671	0.81[EUR][1000 genomes]
rs1922731	0.81[ASN][1000 genomes]
rs1985747	0.87[ASN][1000 genomes]
rs1985821	0.84[ASN][1000 genomes]
rs2107408	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2428627	0.85[ASN][1000 genomes]
rs2525815	0.85[ASN][1000 genomes]
rs2525816	0.85[ASN][1000 genomes]
rs2525820	0.85[ASN][1000 genomes]
rs2525822	0.85[ASN][1000 genomes]
rs2525825	0.85[ASN][1000 genomes]
rs2525826	0.82[ASN][1000 genomes]
rs2525827	0.82[ASN][1000 genomes]
rs2525835	0.81[ASN][1000 genomes]
rs2707882	0.85[ASN][1000 genomes]
rs2707883	0.85[ASN][1000 genomes]
rs2707911	0.85[ASN][1000 genomes]
rs2707920	0.81[ASN][1000 genomes]
rs2707922	0.81[ASN][1000 genomes]
rs4352782	0.82[ASN][1000 genomes]
rs4460297	0.82[ASN][1000 genomes]
rs55718558	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs56306195	0.81[EUR][1000 genomes]
rs57609264	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58237209	0.82[ASN][1000 genomes]
rs60424611	0.87[ASN][1000 genomes]
rs61366591	0.90[ASN][1000 genomes]
rs6466823	0.90[ASN][1000 genomes]
rs6944276	0.81[ASN][1000 genomes]
rs6946316	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6947975	0.81[ASN][1000 genomes]
rs6949163	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6949761	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6956324	0.81[ASN][1000 genomes]
rs6957059	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6957093	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs724336	0.83[ASN][1000 genomes]
rs73368688	0.87[ASN][1000 genomes]
rs73368692	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs73370529	0.80[AMR][1000 genomes]
rs73370544	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73370545	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73370570	0.83[ASN][1000 genomes]
rs73707160	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73709915	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73709922	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73709923	0.80[AMR][1000 genomes]
rs9785059	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888522	chr7:79402551-79619012	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv607675	chr7:79495456-79519229	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79498200-79505600	Weak transcription	Dnd41	blood

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