Variant report

Variant	rs2525826
Chromosome Location	chr7:79508376-79508377
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:105)

rs_ID	r²[population]
rs1008311	0.91[ASN][1000 genomes]
rs1009198	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1009199	0.91[ASN][1000 genomes]
rs10229737	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10256778	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10486911	0.94[ASN][1000 genomes]
rs10486912	0.90[ASN][1000 genomes]
rs11974696	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11975054	0.91[ASN][1000 genomes]
rs11975127	0.91[ASN][1000 genomes]
rs12112783	0.94[ASN][1000 genomes]
rs12113482	0.91[ASN][1000 genomes]
rs12113913	0.90[ASN][1000 genomes]
rs12155353	0.92[EUR][1000 genomes]
rs12531185	0.91[ASN][1000 genomes]
rs1293091	0.84[ASN][1000 genomes]
rs1293109	0.84[ASN][1000 genomes]
rs1293110	0.83[ASN][1000 genomes]
rs1293111	0.81[ASN][1000 genomes]
rs1293112	0.84[ASN][1000 genomes]
rs1293113	0.84[ASN][1000 genomes]
rs1293115	0.84[ASN][1000 genomes]
rs1297413	0.84[ASN][1000 genomes]
rs1319297	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16886703	0.87[ASN][1000 genomes]
rs16886704	0.87[ASN][1000 genomes]
rs17152972	0.91[ASN][1000 genomes]
rs17152982	0.94[ASN][1000 genomes]
rs17152992	0.94[ASN][1000 genomes]
rs17153038	0.93[ASN][1000 genomes]
rs17153067	0.90[ASN][1000 genomes]
rs17153072	0.90[ASN][1000 genomes]
rs17153087	0.87[ASN][1000 genomes]
rs17153094	0.87[ASN][1000 genomes]
rs17793556	0.91[ASN][1000 genomes]
rs1859196	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1922725	0.84[ASN][1000 genomes]
rs1922726	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1922728	0.83[ASN][1000 genomes]
rs1922731	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1985747	0.89[ASN][1000 genomes]
rs1985821	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2107408	0.94[ASN][1000 genomes]
rs2214430	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2246996	0.83[ASN][1000 genomes]
rs2428627	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2525815	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2525816	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2525820	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2525822	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2525825	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2525827	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2525835	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2707858	0.81[ASN][1000 genomes]
rs2707882	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2707883	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2707886	0.84[ASN][1000 genomes]
rs2707887	0.84[ASN][1000 genomes]
rs2707896	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2707911	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2707920	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2707922	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2714653	0.84[ASN][1000 genomes]
rs2714655	0.84[ASN][1000 genomes]
rs2714656	0.83[ASN][1000 genomes]
rs2714661	0.83[ASN][1000 genomes]
rs2714662	0.84[ASN][1000 genomes]
rs2714664	0.83[ASN][1000 genomes]
rs2714695	0.84[ASN][1000 genomes]
rs2714696	0.84[ASN][1000 genomes]
rs333209	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs333210	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs333211	0.93[ASN][1000 genomes]
rs4352782	0.89[ASN][1000 genomes]
rs4460297	0.89[ASN][1000 genomes]
rs57609264	0.91[ASN][1000 genomes]
rs58237209	0.89[ASN][1000 genomes]
rs59333025	0.82[ASN][1000 genomes]
rs60424611	0.94[ASN][1000 genomes]
rs61366591	0.91[ASN][1000 genomes]
rs6466823	0.91[ASN][1000 genomes]
rs6944276	0.87[ASN][1000 genomes]
rs6946316	0.91[ASN][1000 genomes]
rs6946466	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6947975	0.87[ASN][1000 genomes]
rs6949163	0.91[ASN][1000 genomes]
rs6949761	0.94[ASN][1000 genomes]
rs6956324	0.87[ASN][1000 genomes]
rs6957059	0.93[ASN][1000 genomes]
rs6957093	0.93[ASN][1000 genomes]
rs724336	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs73368688	0.94[ASN][1000 genomes]
rs73368692	0.94[ASN][1000 genomes]
rs73370544	0.93[ASN][1000 genomes]
rs73370545	0.93[ASN][1000 genomes]
rs73370570	0.90[ASN][1000 genomes]
rs73707160	0.91[ASN][1000 genomes]
rs73709915	0.91[ASN][1000 genomes]
rs73709922	0.93[ASN][1000 genomes]
rs757191	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7777781	0.81[ASN][1000 genomes]
rs7803517	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7803852	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs886475	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs981490	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888522	chr7:79402551-79619012	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv607675	chr7:79495456-79519229	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79507600-79509200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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