Variant report

Variant	rs6946466
Chromosome Location	chr7:79599445-79599446
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1009198	0.89[EUR][1000 genomes]
rs10229737	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10249341	0.96[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs10256778	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11974696	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12155353	0.86[EUR][1000 genomes]
rs1319297	0.89[EUR][1000 genomes]
rs1859196	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1922731	0.92[EUR][1000 genomes]
rs1985821	0.87[EUR][1000 genomes]
rs2214430	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2428627	0.89[EUR][1000 genomes]
rs2525815	0.89[EUR][1000 genomes]
rs2525816	0.89[EUR][1000 genomes]
rs2525820	0.86[EUR][1000 genomes]
rs2525822	0.89[EUR][1000 genomes]
rs2525825	0.89[EUR][1000 genomes]
rs2525826	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2525827	0.89[EUR][1000 genomes]
rs2525835	0.92[EUR][1000 genomes]
rs2707882	0.88[EUR][1000 genomes]
rs2707883	0.89[EUR][1000 genomes]
rs2707896	0.88[EUR][1000 genomes]
rs2707911	0.89[EUR][1000 genomes]
rs2707920	0.92[EUR][1000 genomes]
rs2707922	0.92[EUR][1000 genomes]
rs333209	0.81[EUR][1000 genomes]
rs333210	0.81[EUR][1000 genomes]
rs62461679	0.95[ASN][1000 genomes]
rs62461680	0.95[ASN][1000 genomes]
rs62461681	0.95[ASN][1000 genomes]
rs62461682	0.95[ASN][1000 genomes]
rs757191	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7803517	0.83[CEU][hapmap];0.92[EUR][1000 genomes]
rs7803852	0.83[CEU][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs886475	0.80[EUR][1000 genomes]
rs981490	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888522	chr7:79402551-79619012	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1032480	chr7:79558011-79625086	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79598800-79600600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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