Variant report

Variant	rs10256778
Chromosome Location	chr7:79562271-79562272
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs1008311	0.86[ASN][1000 genomes]
rs1009198	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1009199	0.86[ASN][1000 genomes]
rs10229737	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10249341	0.81[EUR][1000 genomes]
rs10486911	0.89[ASN][1000 genomes]
rs10486912	0.93[ASN][1000 genomes]
rs11974696	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11975054	0.86[ASN][1000 genomes]
rs11975127	0.86[ASN][1000 genomes]
rs12112783	0.89[ASN][1000 genomes]
rs12113482	0.86[ASN][1000 genomes]
rs12113913	0.84[ASN][1000 genomes]
rs12155353	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12531185	0.86[ASN][1000 genomes]
rs1319297	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16886703	0.93[ASN][1000 genomes]
rs16886704	0.93[ASN][1000 genomes]
rs17152972	0.86[ASN][1000 genomes]
rs17152982	0.89[ASN][1000 genomes]
rs17152992	0.89[ASN][1000 genomes]
rs17153038	0.90[ASN][1000 genomes]
rs17153067	0.93[ASN][1000 genomes]
rs17153072	0.93[ASN][1000 genomes]
rs17153087	0.93[ASN][1000 genomes]
rs17153094	0.93[ASN][1000 genomes]
rs17793556	0.86[ASN][1000 genomes]
rs1859196	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1922731	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1985747	0.83[ASN][1000 genomes]
rs1985821	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2107408	0.89[ASN][1000 genomes]
rs2214430	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2428627	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2525815	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2525816	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2525820	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2525822	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2525825	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2525826	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2525827	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2525835	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2707882	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2707883	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2707896	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2707911	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2707920	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2707922	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs333209	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs333210	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs333211	0.99[ASN][1000 genomes]
rs4352782	0.94[ASN][1000 genomes]
rs4460297	0.94[ASN][1000 genomes]
rs57609264	0.86[ASN][1000 genomes]
rs58237209	0.94[ASN][1000 genomes]
rs60424611	0.89[ASN][1000 genomes]
rs61366591	0.86[ASN][1000 genomes]
rs6466823	0.86[ASN][1000 genomes]
rs6944276	0.93[ASN][1000 genomes]
rs6946316	0.86[ASN][1000 genomes]
rs6946466	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6947975	0.93[ASN][1000 genomes]
rs6949163	0.86[ASN][1000 genomes]
rs6949761	0.89[ASN][1000 genomes]
rs6956324	0.93[ASN][1000 genomes]
rs6957059	0.90[ASN][1000 genomes]
rs6957093	0.90[ASN][1000 genomes]
rs724336	0.93[ASN][1000 genomes]
rs73368688	0.89[ASN][1000 genomes]
rs73368692	0.89[ASN][1000 genomes]
rs73370544	0.90[ASN][1000 genomes]
rs73370545	0.90[ASN][1000 genomes]
rs73370570	0.93[ASN][1000 genomes]
rs73707160	0.86[ASN][1000 genomes]
rs73709915	0.86[ASN][1000 genomes]
rs73709922	0.90[ASN][1000 genomes]
rs757191	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7803517	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7803852	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs886475	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs981490	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888522	chr7:79402551-79619012	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1032480	chr7:79558011-79625086	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79555200-79562800	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr7:79558600-79566000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:79561600-79563200	Enhancers	Osteobl	bone
4	chr7:79562000-79563200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr7:79562200-79563200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr7:79562200-79563400	Enhancers	Dnd41	blood

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