Variant report

Variant	rs4460297
Chromosome Location	chr7:79563086-79563087
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs1008311	0.91[ASN][1000 genomes]
rs1009198	0.86[ASN][1000 genomes]
rs1009199	0.91[ASN][1000 genomes]
rs10256778	0.94[ASN][1000 genomes]
rs10486910	0.83[AMR][1000 genomes]
rs10486911	0.94[ASN][1000 genomes]
rs10486912	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11974696	0.91[ASN][1000 genomes]
rs11975054	0.91[ASN][1000 genomes]
rs11975127	0.91[ASN][1000 genomes]
rs12112783	0.94[ASN][1000 genomes]
rs12113482	0.91[ASN][1000 genomes]
rs12113913	0.90[ASN][1000 genomes]
rs12531185	0.91[ASN][1000 genomes]
rs1319297	0.86[ASN][1000 genomes]
rs16886703	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs16886704	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs17152972	0.91[ASN][1000 genomes]
rs17152982	0.94[ASN][1000 genomes]
rs17152992	0.94[ASN][1000 genomes]
rs17153038	0.95[ASN][1000 genomes]
rs17153067	0.98[ASN][1000 genomes]
rs17153072	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs17153087	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs17153094	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs17153180	0.83[AMR][1000 genomes]
rs17793556	0.91[ASN][1000 genomes]
rs1922731	0.90[ASN][1000 genomes]
rs1985747	0.88[ASN][1000 genomes]
rs1985821	0.85[ASN][1000 genomes]
rs2107408	0.94[ASN][1000 genomes]
rs2428627	0.86[ASN][1000 genomes]
rs2525815	0.86[ASN][1000 genomes]
rs2525816	0.86[ASN][1000 genomes]
rs2525820	0.86[ASN][1000 genomes]
rs2525822	0.86[ASN][1000 genomes]
rs2525825	0.86[ASN][1000 genomes]
rs2525826	0.89[ASN][1000 genomes]
rs2525827	0.89[ASN][1000 genomes]
rs2525835	0.90[ASN][1000 genomes]
rs2707882	0.86[ASN][1000 genomes]
rs2707883	0.86[ASN][1000 genomes]
rs2707896	0.86[ASN][1000 genomes]
rs2707911	0.86[ASN][1000 genomes]
rs2707920	0.90[ASN][1000 genomes]
rs2707922	0.90[ASN][1000 genomes]
rs333209	0.93[ASN][1000 genomes]
rs333210	0.93[ASN][1000 genomes]
rs333211	0.93[ASN][1000 genomes]
rs4352782	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57609264	0.91[ASN][1000 genomes]
rs58237209	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59333025	0.82[ASN][1000 genomes]
rs60424611	0.94[ASN][1000 genomes]
rs61366591	0.91[ASN][1000 genomes]
rs6466823	0.91[ASN][1000 genomes]
rs6944276	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6946316	0.91[ASN][1000 genomes]
rs6947975	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6949163	0.91[ASN][1000 genomes]
rs6949761	0.94[ASN][1000 genomes]
rs6956324	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6957059	0.95[ASN][1000 genomes]
rs6957093	0.95[ASN][1000 genomes]
rs724336	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs73368688	0.94[ASN][1000 genomes]
rs73368692	0.94[ASN][1000 genomes]
rs73370544	0.95[ASN][1000 genomes]
rs73370545	0.95[ASN][1000 genomes]
rs73370570	0.98[ASN][1000 genomes]
rs73707160	0.91[ASN][1000 genomes]
rs73709915	0.91[ASN][1000 genomes]
rs73709922	0.95[ASN][1000 genomes]
rs7803517	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7803852	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs886475	1.00[JPT][hapmap];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888522	chr7:79402551-79619012	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1032480	chr7:79558011-79625086	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79558600-79566000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:79561600-79563200	Enhancers	Osteobl	bone
3	chr7:79562000-79563200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr7:79562200-79563200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr7:79562200-79563400	Enhancers	Dnd41	blood
6	chr7:79562600-79563200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr7:79562800-79563200	Enhancers	Muscle Satellite Cultured Cells	--

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