Variant report

Variant	rs17153087
Chromosome Location	chr7:79553126-79553127
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs1008311	0.90[ASN][1000 genomes]
rs1009198	0.85[ASN][1000 genomes]
rs1009199	0.90[ASN][1000 genomes]
rs10256778	0.93[ASN][1000 genomes]
rs10486910	0.83[AMR][1000 genomes]
rs10486911	0.93[ASN][1000 genomes]
rs10486912	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11974696	0.93[ASN][1000 genomes]
rs11975054	0.90[ASN][1000 genomes]
rs11975127	0.90[ASN][1000 genomes]
rs12112783	0.93[ASN][1000 genomes]
rs12113482	0.90[ASN][1000 genomes]
rs12113913	0.88[ASN][1000 genomes]
rs12531185	0.90[ASN][1000 genomes]
rs1319297	0.85[ASN][1000 genomes]
rs16886703	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16886704	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17152972	0.90[ASN][1000 genomes]
rs17152982	0.93[ASN][1000 genomes]
rs17152992	0.93[ASN][1000 genomes]
rs17153038	0.94[ASN][1000 genomes]
rs17153067	0.97[ASN][1000 genomes]
rs17153072	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs17153094	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17153180	0.83[AMR][1000 genomes]
rs17793556	0.90[ASN][1000 genomes]
rs1922731	0.89[ASN][1000 genomes]
rs1985747	0.87[ASN][1000 genomes]
rs1985821	0.83[ASN][1000 genomes]
rs2107408	0.93[ASN][1000 genomes]
rs2428627	0.85[ASN][1000 genomes]
rs2525815	0.85[ASN][1000 genomes]
rs2525816	0.85[ASN][1000 genomes]
rs2525820	0.85[ASN][1000 genomes]
rs2525822	0.85[ASN][1000 genomes]
rs2525825	0.85[ASN][1000 genomes]
rs2525826	0.87[ASN][1000 genomes]
rs2525827	0.87[ASN][1000 genomes]
rs2525835	0.89[ASN][1000 genomes]
rs2707882	0.85[ASN][1000 genomes]
rs2707883	0.85[ASN][1000 genomes]
rs2707896	0.85[ASN][1000 genomes]
rs2707911	0.85[ASN][1000 genomes]
rs2707920	0.89[ASN][1000 genomes]
rs2707922	0.89[ASN][1000 genomes]
rs333209	0.94[ASN][1000 genomes]
rs333210	0.94[ASN][1000 genomes]
rs333211	0.94[ASN][1000 genomes]
rs4352782	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4460297	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs57609264	0.90[ASN][1000 genomes]
rs58237209	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs59333025	0.81[ASN][1000 genomes]
rs60424611	0.93[ASN][1000 genomes]
rs61366591	0.90[ASN][1000 genomes]
rs6466823	0.90[ASN][1000 genomes]
rs6944276	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6946316	0.90[ASN][1000 genomes]
rs6947975	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6949163	0.90[ASN][1000 genomes]
rs6949761	0.93[ASN][1000 genomes]
rs6956324	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6957059	0.94[ASN][1000 genomes]
rs6957093	0.94[ASN][1000 genomes]
rs724336	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs73368688	0.93[ASN][1000 genomes]
rs73368692	0.93[ASN][1000 genomes]
rs73370544	0.94[ASN][1000 genomes]
rs73370545	0.94[ASN][1000 genomes]
rs73370570	0.97[ASN][1000 genomes]
rs73707160	0.90[ASN][1000 genomes]
rs73709915	0.90[ASN][1000 genomes]
rs73709922	0.94[ASN][1000 genomes]
rs7803517	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7803852	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs886475	1.00[JPT][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888522	chr7:79402551-79619012	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79551800-79554600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr7:79552400-79554800	Enhancers	NHLF	lung
3	chr7:79552600-79553400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr7:79552600-79554000	Weak transcription	Dnd41	blood
5	chr7:79552800-79553800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr7:79552800-79554400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr7:79553000-79555200	Enhancers	Muscle Satellite Cultured Cells	--

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