Variant report

Variant	rs12155353
Chromosome Location	chr7:79564309-79564310
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1009198	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10229737	0.85[EUR][1000 genomes]
rs10256778	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11974696	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1319297	0.91[EUR][1000 genomes]
rs1859196	0.86[EUR][1000 genomes]
rs1922731	0.94[EUR][1000 genomes]
rs1985821	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2214430	0.94[EUR][1000 genomes]
rs2428627	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2525815	0.91[EUR][1000 genomes]
rs2525816	0.91[EUR][1000 genomes]
rs2525820	0.80[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs2525822	0.92[EUR][1000 genomes]
rs2525825	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2525826	0.92[EUR][1000 genomes]
rs2525827	0.92[EUR][1000 genomes]
rs2525835	0.94[EUR][1000 genomes]
rs2707882	0.90[EUR][1000 genomes]
rs2707883	0.91[EUR][1000 genomes]
rs2707896	0.90[EUR][1000 genomes]
rs2707911	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2707920	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2707922	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs333209	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs333210	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs333211	0.81[ASN][1000 genomes]
rs6946466	0.86[EUR][1000 genomes]
rs757191	0.85[EUR][1000 genomes]
rs7803517	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7803852	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs886475	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs981490	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888522	chr7:79402551-79619012	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1032480	chr7:79558011-79625086	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79558600-79566000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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