Variant report
| Variant | rs62461681 |
|---|---|
| Chromosome Location | chr7:79598767-79598768 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10229737 | 0.92[ASN][1000 genomes] |
| rs10237226 | 0.85[EUR][1000 genomes] |
| rs12666674 | 1.00[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs12667856 | 1.00[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs12670640 | 0.85[EUR][1000 genomes] |
| rs12670674 | 1.00[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs17153199 | 0.85[EUR][1000 genomes] |
| rs1859196 | 0.94[ASN][1000 genomes] |
| rs4574785 | 0.85[EUR][1000 genomes] |
| rs56191620 | 0.85[EUR][1000 genomes] |
| rs62459946 | 1.00[AMR][1000 genomes] |
| rs62460731 | 1.00[AMR][1000 genomes] |
| rs62461676 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs62461679 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62461680 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62461682 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62461685 | 0.85[EUR][1000 genomes] |
| rs6946466 | 0.95[ASN][1000 genomes] |
| rs757191 | 0.94[ASN][1000 genomes] |
| rs981490 | 0.92[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv888522 | chr7:79402551-79619012 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv1032480 | chr7:79558011-79625086 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv429785 | chr7:79589749-80177049 | Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:79597800-79598800 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
