Variant report

Variant	rs56191620
Chromosome Location	chr7:79604752-79604753
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10237226	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10259572	1.00[ASN][1000 genomes]
rs12666674	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12667856	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12670640	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12670674	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17153199	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4574785	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62461676	0.85[EUR][1000 genomes]
rs62461679	0.85[EUR][1000 genomes]
rs62461680	0.85[EUR][1000 genomes]
rs62461681	0.85[EUR][1000 genomes]
rs62461682	0.85[EUR][1000 genomes]
rs62461683	0.97[ASN][1000 genomes]
rs62461684	0.97[ASN][1000 genomes]
rs62461685	1.00[EUR][1000 genomes]
rs6466884	1.00[ASN][1000 genomes]
rs6946783	1.00[ASN][1000 genomes]
rs7793765	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888522	chr7:79402551-79619012	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1032480	chr7:79558011-79625086	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79604600-79605400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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