Variant report

Variant	rs62461676
Chromosome Location	chr7:79565009-79565010
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10237226	0.85[EUR][1000 genomes]
rs12666674	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12667856	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12670640	0.85[EUR][1000 genomes]
rs12670674	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17153199	0.85[EUR][1000 genomes]
rs4574785	0.85[EUR][1000 genomes]
rs56191620	0.85[EUR][1000 genomes]
rs62459946	1.00[AMR][1000 genomes]
rs62461679	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62461680	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62461681	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62461682	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62461685	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888522	chr7:79402551-79619012	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1032480	chr7:79558011-79625086	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79558600-79566000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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