Variant report

Variant	rs12670640
Chromosome Location	chr7:79617546-79617547
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10237226	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10259572	1.00[ASN][1000 genomes]
rs12666674	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12667856	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12670674	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17153199	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4574785	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56191620	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62461676	0.85[EUR][1000 genomes]
rs62461679	0.85[EUR][1000 genomes]
rs62461680	0.85[EUR][1000 genomes]
rs62461681	0.85[EUR][1000 genomes]
rs62461682	0.85[EUR][1000 genomes]
rs62461683	0.97[ASN][1000 genomes]
rs62461684	0.97[ASN][1000 genomes]
rs62461685	1.00[EUR][1000 genomes]
rs6466884	1.00[ASN][1000 genomes]
rs6946783	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888522	chr7:79402551-79619012	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1032480	chr7:79558011-79625086	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79612000-79618000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr7:79614000-79618000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr7:79615200-79617600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr7:79615400-79617600	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr7:79615400-79617600	Weak transcription	Osteobl	bone
6	chr7:79615400-79618200	Weak transcription	NHLF	lung
7	chr7:79617200-79618400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr7:79617400-79618400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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