Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10229737	0.92[ASN][1000 genomes]
rs10237226	0.85[EUR][1000 genomes]
rs12666674	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12667856	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12670640	0.85[EUR][1000 genomes]
rs12670674	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17153199	0.85[EUR][1000 genomes]
rs1859196	0.94[ASN][1000 genomes]
rs4574785	0.85[EUR][1000 genomes]
rs56191620	0.85[EUR][1000 genomes]
rs62459946	1.00[AMR][1000 genomes]
rs62460731	1.00[AMR][1000 genomes]
rs62461676	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62461679	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62461680	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62461681	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62461685	0.85[EUR][1000 genomes]
rs6946466	0.95[ASN][1000 genomes]
rs757191	0.94[ASN][1000 genomes]
rs981490	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888522	chr7:79402551-79619012	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1032480	chr7:79558011-79625086	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79598800-79600600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr7:79599600-79600600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr7:79599600-79600800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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