Variant report

Variant	rs2714662
Chromosome Location	chr7:79440703-79440704
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 151 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:146)

rs_ID	r²[population]
rs1008311	0.81[ASN][1000 genomes]
rs1009198	0.86[ASN][1000 genomes]
rs1009199	0.81[ASN][1000 genomes]
rs10240404	0.80[EUR][1000 genomes]
rs10251224	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10252802	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11975054	0.81[ASN][1000 genomes]
rs11975127	0.81[ASN][1000 genomes]
rs11977110	0.86[ASN][1000 genomes]
rs12113482	0.81[ASN][1000 genomes]
rs12531185	0.81[ASN][1000 genomes]
rs1293091	1.00[ASN][1000 genomes]
rs1293109	1.00[ASN][1000 genomes]
rs1293110	0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1293111	0.97[ASN][1000 genomes]
rs1293112	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1293113	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1293114	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1293115	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1293116	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1297413	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1319297	0.86[ASN][1000 genomes]
rs1523834	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1523842	0.82[EUR][1000 genomes]
rs1523843	0.82[EUR][1000 genomes]
rs1589726	0.82[EUR][1000 genomes]
rs1608511	0.83[EUR][1000 genomes]
rs16886625	0.84[ASN][1000 genomes]
rs17147916	0.84[ASN][1000 genomes]
rs17152857	0.86[ASN][1000 genomes]
rs17152858	0.86[ASN][1000 genomes]
rs17152859	0.86[ASN][1000 genomes]
rs17152860	0.86[ASN][1000 genomes]
rs17152864	0.86[ASN][1000 genomes]
rs17152888	0.86[ASN][1000 genomes]
rs17152926	0.95[ASN][1000 genomes]
rs17152944	0.92[ASN][1000 genomes]
rs17152972	0.81[ASN][1000 genomes]
rs17793556	0.81[ASN][1000 genomes]
rs1851752	0.86[ASN][1000 genomes]
rs1880167	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1916732	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1916740	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1922725	1.00[ASN][1000 genomes]
rs1922726	1.00[ASN][1000 genomes]
rs1922728	0.99[ASN][1000 genomes]
rs1922729	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1922731	0.83[ASN][1000 genomes]
rs1922734	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1985747	0.84[ASN][1000 genomes]
rs1985821	0.85[ASN][1000 genomes]
rs2222904	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2244728	0.83[EUR][1000 genomes]
rs2244821	0.91[EUR][1000 genomes]
rs2246996	0.99[ASN][1000 genomes]
rs2264651	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2366248	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2428626	0.86[AFR][1000 genomes]
rs2428627	0.86[ASN][1000 genomes]
rs2465512	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2465515	0.87[ASN][1000 genomes]
rs2465517	0.80[EUR][1000 genomes]
rs2525815	0.86[ASN][1000 genomes]
rs2525816	0.86[ASN][1000 genomes]
rs2525820	0.86[ASN][1000 genomes]
rs2525821	0.86[AFR][1000 genomes]
rs2525822	0.86[ASN][1000 genomes]
rs2525825	0.86[ASN][1000 genomes]
rs2525826	0.84[ASN][1000 genomes]
rs2525827	0.84[ASN][1000 genomes]
rs2525835	0.83[ASN][1000 genomes]
rs2689777	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2689779	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2689780	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2689782	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2689797	0.82[EUR][1000 genomes]
rs2689802	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2689804	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2689805	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2689806	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2689810	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2689811	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2707858	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2707882	0.86[ASN][1000 genomes]
rs2707883	0.86[ASN][1000 genomes]
rs2707886	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2707887	1.00[ASN][1000 genomes]
rs2707888	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2707890	0.83[AFR][1000 genomes]
rs2707891	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2707894	0.86[AFR][1000 genomes]
rs2707896	0.81[ASN][1000 genomes]
rs2707897	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2707903	0.89[AFR][1000 genomes]
rs2707911	0.86[ASN][1000 genomes]
rs2707912	0.81[AFR][1000 genomes]
rs2707915	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2707920	0.83[ASN][1000 genomes]
rs2707922	0.83[ASN][1000 genomes]
rs2707926	0.91[EUR][1000 genomes]
rs2714640	0.82[ASN][1000 genomes]
rs2714641	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2714642	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2714652	0.82[EUR][1000 genomes]
rs2714653	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2714655	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2714656	0.99[ASN][1000 genomes]
rs2714661	0.84[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs2714664	0.99[ASN][1000 genomes]
rs2714680	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2714695	1.00[ASN][1000 genomes]
rs2714696	1.00[ASN][1000 genomes]
rs2714697	0.96[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs2714701	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2714702	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs333211	0.83[EUR][1000 genomes]
rs37170	0.83[EUR][1000 genomes]
rs4288313	0.80[EUR][1000 genomes]
rs4394329	0.95[ASN][1000 genomes]
rs55772364	0.86[ASN][1000 genomes]
rs56320258	0.86[ASN][1000 genomes]
rs56351881	0.86[ASN][1000 genomes]
rs57226669	0.86[ASN][1000 genomes]
rs57609264	0.81[ASN][1000 genomes]
rs57942274	0.86[ASN][1000 genomes]
rs59329952	0.84[ASN][1000 genomes]
rs60390345	0.86[ASN][1000 genomes]
rs60870507	0.86[ASN][1000 genomes]
rs61366591	0.81[ASN][1000 genomes]
rs6466768	0.82[EUR][1000 genomes]
rs6466823	0.81[ASN][1000 genomes]
rs6946316	0.81[ASN][1000 genomes]
rs6949163	0.81[ASN][1000 genomes]
rs6963713	0.83[EUR][1000 genomes]
rs73381226	0.86[ASN][1000 genomes]
rs73705067	0.86[ASN][1000 genomes]
rs73707160	0.81[ASN][1000 genomes]
rs73709915	0.81[ASN][1000 genomes]
rs7777781	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7780715	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7789978	0.84[ASN][1000 genomes]
rs7794240	0.80[EUR][1000 genomes]
rs940305	0.82[EUR][1000 genomes]
rs940306	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs940307	0.82[EUR][1000 genomes]
rs940308	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	esv2829876	chr7:79355196-79483480	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv888521	chr7:79371206-79483480	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv888522	chr7:79402551-79619012	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79440400-79440800	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr7:79440400-79440800	Enhancers	Fetal Lung	lung
3	chr7:79440600-79441000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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