Variant report

Variant	rs2707891
Chromosome Location	chr7:79457650-79457651
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10251224	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10252802	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11971717	1.00[ASN][1000 genomes]
rs1293101	1.00[ASN][1000 genomes]
rs1293110	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1293112	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1293113	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1293114	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1293115	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1293116	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1297413	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13242909	1.00[ASN][1000 genomes]
rs1523834	0.82[EUR][1000 genomes]
rs1880167	0.83[EUR][1000 genomes]
rs1916732	0.83[EUR][1000 genomes]
rs1916740	0.83[EUR][1000 genomes]
rs1916741	0.81[AMR][1000 genomes]
rs1922729	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1922734	0.83[EUR][1000 genomes]
rs2189281	1.00[ASN][1000 genomes]
rs2214430	1.00[ASN][1000 genomes]
rs2222904	0.83[EUR][1000 genomes]
rs2244821	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2264651	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2365976	1.00[ASN][1000 genomes]
rs2366248	0.83[EUR][1000 genomes]
rs2428626	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2464827	1.00[ASN][1000 genomes]
rs2465512	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2525817	1.00[ASN][1000 genomes]
rs2525818	1.00[ASN][1000 genomes]
rs2525819	1.00[ASN][1000 genomes]
rs2525821	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2525828	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2689777	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2689779	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2689780	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2689782	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2689802	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2689804	0.82[EUR][1000 genomes]
rs2689805	0.82[EUR][1000 genomes]
rs2689806	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2689810	0.83[EUR][1000 genomes]
rs2689811	0.82[EUR][1000 genomes]
rs2707858	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2707886	0.95[EUR][1000 genomes]
rs2707888	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2707890	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2707893	1.00[ASN][1000 genomes]
rs2707894	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2707895	1.00[ASN][1000 genomes]
rs2707897	0.82[EUR][1000 genomes]
rs2707903	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2707910	1.00[ASN][1000 genomes]
rs2707912	1.00[ASN][1000 genomes]
rs2707915	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2707916	1.00[ASN][1000 genomes]
rs2707919	1.00[ASN][1000 genomes]
rs2707926	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2714641	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2714642	0.82[EUR][1000 genomes]
rs2714653	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2714655	0.95[EUR][1000 genomes]
rs2714662	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2714680	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2714697	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2714701	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2714702	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs333211	0.88[EUR][1000 genomes]
rs37169	1.00[ASN][1000 genomes]
rs37170	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs757192	1.00[ASN][1000 genomes]
rs7777781	0.89[EUR][1000 genomes]
rs9649000	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs981489	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	esv2829876	chr7:79355196-79483480	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv888521	chr7:79371206-79483480	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv888522	chr7:79402551-79619012	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv5808	chr7:79453632-79502455	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79457000-79457800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr7:79457400-79457800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr7:79457400-79458800	Enhancers	NHLF	lung

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