Variant report

Variant	rs9649000
Chromosome Location	chr7:79558403-79558404
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10251224	1.00[ASN][1000 genomes]
rs10252802	1.00[ASN][1000 genomes]
rs11971717	1.00[ASN][1000 genomes]
rs1293101	1.00[ASN][1000 genomes]
rs1293110	0.83[EUR][1000 genomes]
rs1293112	0.83[EUR][1000 genomes]
rs1293113	0.81[EUR][1000 genomes]
rs1293114	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1293115	0.83[EUR][1000 genomes]
rs1293116	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1297413	0.83[EUR][1000 genomes]
rs13242909	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1922729	1.00[ASN][1000 genomes]
rs2189281	1.00[ASN][1000 genomes]
rs2214430	1.00[ASN][1000 genomes]
rs2244821	1.00[ASN][1000 genomes]
rs2264651	1.00[ASN][1000 genomes]
rs2365976	1.00[ASN][1000 genomes]
rs2428626	1.00[ASN][1000 genomes]
rs2464827	1.00[ASN][1000 genomes]
rs2525817	1.00[ASN][1000 genomes]
rs2525818	1.00[ASN][1000 genomes]
rs2525819	1.00[ASN][1000 genomes]
rs2525821	1.00[ASN][1000 genomes]
rs2525828	1.00[ASN][1000 genomes]
rs2689777	1.00[ASN][1000 genomes]
rs2689779	1.00[ASN][1000 genomes]
rs2689780	1.00[ASN][1000 genomes]
rs2689782	1.00[ASN][1000 genomes]
rs2689806	1.00[ASN][1000 genomes]
rs2707886	0.82[EUR][1000 genomes]
rs2707888	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2707890	1.00[ASN][1000 genomes]
rs2707891	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2707893	1.00[ASN][1000 genomes]
rs2707894	1.00[ASN][1000 genomes]
rs2707895	1.00[ASN][1000 genomes]
rs2707903	1.00[ASN][1000 genomes]
rs2707910	1.00[ASN][1000 genomes]
rs2707912	1.00[ASN][1000 genomes]
rs2707915	1.00[ASN][1000 genomes]
rs2707916	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2707919	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2707926	1.00[ASN][1000 genomes]
rs2714641	1.00[ASN][1000 genomes]
rs2714653	0.83[EUR][1000 genomes]
rs2714655	0.82[EUR][1000 genomes]
rs2714680	1.00[ASN][1000 genomes]
rs2714697	1.00[ASN][1000 genomes]
rs2714701	1.00[ASN][1000 genomes]
rs2714702	1.00[ASN][1000 genomes]
rs333211	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs37169	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs37170	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs757192	1.00[ASN][1000 genomes]
rs981489	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888522	chr7:79402551-79619012	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1032480	chr7:79558011-79625086	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79554800-79559600	Weak transcription	Osteobl	bone
2	chr7:79555200-79562800	Weak transcription	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links