Variant report

Variant	rs37170
Chromosome Location	chr7:79561556-79561557
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10242809	0.82[AFR][1000 genomes]
rs10251224	1.00[ASN][1000 genomes]
rs10252802	1.00[ASN][1000 genomes]
rs10253003	0.85[AFR][1000 genomes]
rs11971717	1.00[ASN][1000 genomes]
rs11983816	0.80[AFR][1000 genomes]
rs1293101	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1293110	0.88[EUR][1000 genomes]
rs1293112	0.88[EUR][1000 genomes]
rs1293113	0.85[EUR][1000 genomes]
rs1293114	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1293115	0.88[EUR][1000 genomes]
rs1293116	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1297413	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13242909	1.00[ASN][1000 genomes]
rs1922729	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2189281	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2214430	1.00[ASN][1000 genomes]
rs2244821	1.00[ASN][1000 genomes]
rs2264651	1.00[ASN][1000 genomes]
rs2365976	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2428626	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2464827	1.00[ASN][1000 genomes]
rs2525817	1.00[ASN][1000 genomes]
rs2525818	1.00[ASN][1000 genomes]
rs2525819	1.00[ASN][1000 genomes]
rs2525821	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2525828	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2689777	1.00[ASN][1000 genomes]
rs2689779	1.00[ASN][1000 genomes]
rs2689780	1.00[ASN][1000 genomes]
rs2689782	1.00[ASN][1000 genomes]
rs2689806	1.00[ASN][1000 genomes]
rs2707858	0.80[EUR][1000 genomes]
rs2707886	0.86[EUR][1000 genomes]
rs2707888	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2707890	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2707891	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2707893	1.00[ASN][1000 genomes]
rs2707894	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2707895	1.00[ASN][1000 genomes]
rs2707903	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2707910	1.00[ASN][1000 genomes]
rs2707912	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2707915	1.00[ASN][1000 genomes]
rs2707916	1.00[ASN][1000 genomes]
rs2707919	1.00[ASN][1000 genomes]
rs2707926	1.00[ASN][1000 genomes]
rs2714641	1.00[ASN][1000 genomes]
rs2714653	0.88[EUR][1000 genomes]
rs2714655	0.86[EUR][1000 genomes]
rs2714662	0.83[EUR][1000 genomes]
rs2714680	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2714697	1.00[ASN][1000 genomes]
rs2714701	1.00[ASN][1000 genomes]
rs2714702	1.00[ASN][1000 genomes]
rs333211	1.00[EUR][1000 genomes]
rs37168	0.88[AFR][1000 genomes]
rs37169	1.00[ASN][1000 genomes]
rs37171	0.93[AFR][1000 genomes]
rs757192	1.00[ASN][1000 genomes]
rs7777781	0.80[EUR][1000 genomes]
rs9649000	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs981489	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888522	chr7:79402551-79619012	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1032480	chr7:79558011-79625086	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79555200-79562800	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr7:79558600-79566000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:79561200-79561600	Weak transcription	Osteobl	bone

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