Variant report

Variant	rs10242809
Chromosome Location	chr7:79598917-79598918
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10253003	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11971717	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11983816	0.82[AFR][1000 genomes]
rs1293101	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13242909	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs189149	0.83[EUR][1000 genomes]
rs2189281	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2365976	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2428626	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2464827	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2525817	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2525818	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2525819	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2525821	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2525828	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2707890	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2707893	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2707894	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2707895	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2707903	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2707910	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2707912	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2707916	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2707919	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs37168	0.84[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs37169	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs37170	0.82[AFR][1000 genomes]
rs37171	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs757192	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs981489	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888522	chr7:79402551-79619012	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1032480	chr7:79558011-79625086	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79598800-79600600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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