Variant report

Variant	rs13242909
Chromosome Location	chr7:79551851-79551852
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:131908257..131908882-chr7:79551578..79552135,2	MCF-7	breast:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10242809	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10251224	1.00[ASN][1000 genomes]
rs10252802	1.00[ASN][1000 genomes]
rs10253003	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11971717	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1293101	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1293114	1.00[ASN][1000 genomes]
rs1293116	1.00[ASN][1000 genomes]
rs189149	0.83[EUR][1000 genomes]
rs1922729	1.00[ASN][1000 genomes]
rs2189281	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2214430	1.00[ASN][1000 genomes]
rs2244821	1.00[ASN][1000 genomes]
rs2264651	1.00[ASN][1000 genomes]
rs2365976	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2428626	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2464827	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2465512	1.00[ASN][1000 genomes]
rs2525817	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2525818	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2525819	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2525821	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2525828	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2689777	1.00[ASN][1000 genomes]
rs2689779	1.00[ASN][1000 genomes]
rs2689780	1.00[ASN][1000 genomes]
rs2689782	1.00[ASN][1000 genomes]
rs2689806	1.00[ASN][1000 genomes]
rs2707888	1.00[ASN][1000 genomes]
rs2707890	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2707891	1.00[ASN][1000 genomes]
rs2707893	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2707894	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2707895	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2707903	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2707910	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2707912	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2707915	1.00[ASN][1000 genomes]
rs2707916	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2707919	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2707926	1.00[ASN][1000 genomes]
rs2714641	1.00[ASN][1000 genomes]
rs2714680	1.00[ASN][1000 genomes]
rs2714697	1.00[ASN][1000 genomes]
rs2714701	1.00[ASN][1000 genomes]
rs2714702	1.00[ASN][1000 genomes]
rs37168	0.90[EUR][1000 genomes]
rs37169	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs37170	1.00[ASN][1000 genomes]
rs37171	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs757192	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9649000	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs981489	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888522	chr7:79402551-79619012	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79551000-79552400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:79551600-79552400	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr7:79551600-79552600	ZNF genes & repeats	Dnd41	blood
4	chr7:79551800-79552400	Active TSS	Adipose Nuclei	Adipose
5	chr7:79551800-79554600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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