Variant report

Variant	rs2689806
Chromosome Location	chr7:79401859-79401860
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 106 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs10240404	0.86[EUR][1000 genomes]
rs10251224	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10252802	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11971717	1.00[ASN][1000 genomes]
rs1293101	1.00[ASN][1000 genomes]
rs1293110	0.83[EUR][1000 genomes]
rs1293112	0.83[EUR][1000 genomes]
rs1293113	0.80[EUR][1000 genomes]
rs1293114	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1293115	0.83[EUR][1000 genomes]
rs1293116	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1297413	0.83[EUR][1000 genomes]
rs13242909	1.00[ASN][1000 genomes]
rs1523834	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1523842	0.88[EUR][1000 genomes]
rs1523843	0.88[EUR][1000 genomes]
rs1589726	0.88[EUR][1000 genomes]
rs1608511	0.89[EUR][1000 genomes]
rs1880167	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1916732	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1916740	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1922729	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1922734	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2189281	1.00[ASN][1000 genomes]
rs2214430	1.00[ASN][1000 genomes]
rs2222904	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2244728	0.89[EUR][1000 genomes]
rs2244821	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2264651	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2365976	1.00[ASN][1000 genomes]
rs2366248	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2428626	1.00[ASN][1000 genomes]
rs2464827	1.00[ASN][1000 genomes]
rs2465512	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2465517	0.86[EUR][1000 genomes]
rs2525817	1.00[ASN][1000 genomes]
rs2525818	1.00[ASN][1000 genomes]
rs2525819	1.00[ASN][1000 genomes]
rs2525821	1.00[ASN][1000 genomes]
rs2525828	1.00[ASN][1000 genomes]
rs2689777	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2689779	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2689780	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2689782	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2689797	0.88[EUR][1000 genomes]
rs2689802	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2689804	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2689805	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2689810	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2689811	0.98[EUR][1000 genomes]
rs2707858	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2707886	0.88[EUR][1000 genomes]
rs2707888	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2707890	1.00[ASN][1000 genomes]
rs2707891	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2707893	1.00[ASN][1000 genomes]
rs2707894	1.00[ASN][1000 genomes]
rs2707895	1.00[ASN][1000 genomes]
rs2707897	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2707903	1.00[ASN][1000 genomes]
rs2707910	1.00[ASN][1000 genomes]
rs2707912	1.00[ASN][1000 genomes]
rs2707915	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2707916	1.00[ASN][1000 genomes]
rs2707919	1.00[ASN][1000 genomes]
rs2707926	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2714641	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2714642	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2714652	0.88[EUR][1000 genomes]
rs2714653	0.83[EUR][1000 genomes]
rs2714655	0.88[EUR][1000 genomes]
rs2714662	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2714680	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2714697	1.00[ASN][1000 genomes]
rs2714701	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2714702	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs37169	1.00[ASN][1000 genomes]
rs37170	1.00[ASN][1000 genomes]
rs4288313	0.86[EUR][1000 genomes]
rs6466768	0.88[EUR][1000 genomes]
rs6963713	0.89[EUR][1000 genomes]
rs757192	1.00[ASN][1000 genomes]
rs7777781	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7780715	0.88[EUR][1000 genomes]
rs7794240	0.86[EUR][1000 genomes]
rs940305	0.88[EUR][1000 genomes]
rs940306	0.88[EUR][1000 genomes]
rs940307	0.88[EUR][1000 genomes]
rs940308	0.88[EUR][1000 genomes]
rs9649000	1.00[ASN][1000 genomes]
rs981489	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	esv2758121	chr7:79261464-79427646	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2759540	chr7:79261464-79427646	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv607670	chr7:79310586-79434743	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv464602	chr7:79315761-79402551	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv607671	chr7:79315761-79402551	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1016075	chr7:79316477-79404957	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1033114	chr7:79317818-79408713	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv1020043	chr7:79320516-79401875	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv1018854	chr7:79320516-79404957	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv1025266	chr7:79320516-79408713	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv1023653	chr7:79320516-79410073	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	esv2829876	chr7:79355196-79483480	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv888521	chr7:79371206-79483480	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79398600-79402000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr7:79399400-79404800	Weak transcription	Fetal Lung	lung
3	chr7:79399400-79411000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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