Variant report
Variant | rs17152944 |
---|---|
Chromosome Location | chr7:79451611-79451612 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1008311 | 0.83[ASN][1000 genomes] |
rs1009199 | 0.83[ASN][1000 genomes] |
rs10486911 | 0.80[ASN][1000 genomes] |
rs11975054 | 0.83[ASN][1000 genomes] |
rs11975127 | 0.83[ASN][1000 genomes] |
rs11977110 | 0.89[ASN][1000 genomes] |
rs12112783 | 0.80[ASN][1000 genomes] |
rs12113482 | 0.83[ASN][1000 genomes] |
rs12113913 | 0.82[ASN][1000 genomes] |
rs12531185 | 0.83[ASN][1000 genomes] |
rs1293091 | 0.92[ASN][1000 genomes] |
rs1293109 | 0.92[ASN][1000 genomes] |
rs1293110 | 0.91[ASN][1000 genomes] |
rs1293111 | 0.89[ASN][1000 genomes] |
rs1293112 | 0.92[ASN][1000 genomes] |
rs1293113 | 0.92[ASN][1000 genomes] |
rs1293115 | 0.92[ASN][1000 genomes] |
rs1297413 | 0.92[ASN][1000 genomes] |
rs1523834 | 0.81[ASN][1000 genomes] |
rs16886625 | 0.86[ASN][1000 genomes] |
rs17147916 | 0.86[ASN][1000 genomes] |
rs17152857 | 0.89[ASN][1000 genomes] |
rs17152858 | 0.89[ASN][1000 genomes] |
rs17152859 | 0.89[ASN][1000 genomes] |
rs17152860 | 0.89[ASN][1000 genomes] |
rs17152864 | 0.89[ASN][1000 genomes] |
rs17152888 | 0.89[ASN][1000 genomes] |
rs17152926 | 0.97[ASN][1000 genomes] |
rs17152972 | 0.83[ASN][1000 genomes] |
rs17152982 | 0.80[ASN][1000 genomes] |
rs17152992 | 0.80[ASN][1000 genomes] |
rs17793556 | 0.83[ASN][1000 genomes] |
rs1851752 | 0.89[ASN][1000 genomes] |
rs1880167 | 0.84[ASN][1000 genomes] |
rs1916732 | 0.84[ASN][1000 genomes] |
rs1916740 | 0.84[ASN][1000 genomes] |
rs1922725 | 0.92[ASN][1000 genomes] |
rs1922726 | 0.92[ASN][1000 genomes] |
rs1922728 | 0.91[ASN][1000 genomes] |
rs1922734 | 0.84[ASN][1000 genomes] |
rs1985747 | 0.86[ASN][1000 genomes] |
rs2107408 | 0.80[ASN][1000 genomes] |
rs2222904 | 0.84[ASN][1000 genomes] |
rs2246996 | 0.91[ASN][1000 genomes] |
rs2366248 | 0.84[ASN][1000 genomes] |
rs2689804 | 0.84[ASN][1000 genomes] |
rs2689805 | 0.84[ASN][1000 genomes] |
rs2689810 | 0.84[ASN][1000 genomes] |
rs2707858 | 0.89[ASN][1000 genomes] |
rs2707886 | 0.92[ASN][1000 genomes] |
rs2707887 | 0.92[ASN][1000 genomes] |
rs2707897 | 0.81[ASN][1000 genomes] |
rs2714642 | 0.84[ASN][1000 genomes] |
rs2714653 | 0.92[ASN][1000 genomes] |
rs2714655 | 0.92[ASN][1000 genomes] |
rs2714656 | 0.91[ASN][1000 genomes] |
rs2714661 | 0.91[ASN][1000 genomes] |
rs2714662 | 0.92[ASN][1000 genomes] |
rs2714664 | 0.91[ASN][1000 genomes] |
rs2714695 | 0.92[ASN][1000 genomes] |
rs2714696 | 0.92[ASN][1000 genomes] |
rs4394329 | 0.97[ASN][1000 genomes] |
rs55772364 | 0.89[ASN][1000 genomes] |
rs56320258 | 0.89[ASN][1000 genomes] |
rs56351881 | 0.89[ASN][1000 genomes] |
rs57226669 | 0.89[ASN][1000 genomes] |
rs57609264 | 0.83[ASN][1000 genomes] |
rs57942274 | 0.89[ASN][1000 genomes] |
rs59329952 | 0.86[ASN][1000 genomes] |
rs60390345 | 0.89[ASN][1000 genomes] |
rs60424611 | 0.80[ASN][1000 genomes] |
rs60870507 | 0.89[ASN][1000 genomes] |
rs61366591 | 0.83[ASN][1000 genomes] |
rs6466823 | 0.83[ASN][1000 genomes] |
rs6946316 | 0.83[ASN][1000 genomes] |
rs6949163 | 0.83[ASN][1000 genomes] |
rs6949761 | 0.80[ASN][1000 genomes] |
rs724336 | 0.86[CHB][hapmap];0.85[JPT][hapmap] |
rs73368688 | 0.80[ASN][1000 genomes] |
rs73368692 | 0.80[ASN][1000 genomes] |
rs73381226 | 0.89[ASN][1000 genomes] |
rs73705067 | 0.89[ASN][1000 genomes] |
rs73707160 | 0.83[ASN][1000 genomes] |
rs73709915 | 0.83[ASN][1000 genomes] |
rs7777781 | 0.89[ASN][1000 genomes] |
rs7789978 | 0.86[ASN][1000 genomes] |
rs7803517 | 0.85[JPT][hapmap] |
rs7803852 | 0.85[JPT][hapmap] |
rs886475 | 0.85[JPT][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv464598 | chr7:78492642-79483480 | Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
2 | nsv607659 | chr7:78492642-79483480 | Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
3 | esv2829876 | chr7:79355196-79483480 | Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
4 | nsv888521 | chr7:79371206-79483480 | Enhancers Weak transcription Active TSS Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
5 | nsv888522 | chr7:79402551-79619012 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr7:79449600-79452200 | Weak transcription | Fetal Brain Male | brain |
2 | chr7:79449800-79457400 | Weak transcription | NHLF | lung |
3 | chr7:79450000-79452200 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
4 | chr7:79450000-79452400 | Weak transcription | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
5 | chr7:79450000-79452400 | Weak transcription | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
6 | chr7:79450200-79452400 | Weak transcription | Fetal Adrenal Gland | Adrenal Gland |
7 | chr7:79450400-79457000 | Weak transcription | IMR90 fetal lung fibroblasts Cell Line | lung |
8 | chr7:79451600-79452600 | Weak transcription | Fetal Lung | lung |