Variant report

Variant	rs1293111
Chromosome Location	chr7:79448670-79448671
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs1009198	0.84[ASN][1000 genomes]
rs11977110	0.84[ASN][1000 genomes]
rs1293091	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1293109	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1293110	0.96[ASN][1000 genomes]
rs1293112	0.97[ASN][1000 genomes]
rs1293113	0.97[ASN][1000 genomes]
rs1293115	0.97[ASN][1000 genomes]
rs1297413	0.97[ASN][1000 genomes]
rs1319297	0.84[ASN][1000 genomes]
rs1523834	0.87[ASN][1000 genomes]
rs16886625	0.81[ASN][1000 genomes]
rs17147916	0.81[ASN][1000 genomes]
rs17152857	0.84[ASN][1000 genomes]
rs17152858	0.84[ASN][1000 genomes]
rs17152859	0.84[ASN][1000 genomes]
rs17152860	0.84[ASN][1000 genomes]
rs17152864	0.84[ASN][1000 genomes]
rs17152888	0.84[ASN][1000 genomes]
rs17152926	0.92[ASN][1000 genomes]
rs17152944	0.89[ASN][1000 genomes]
rs1851752	0.84[ASN][1000 genomes]
rs1880167	0.89[ASN][1000 genomes]
rs1916732	0.89[ASN][1000 genomes]
rs1916740	0.89[ASN][1000 genomes]
rs1922725	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1922726	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1922728	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1922734	0.89[ASN][1000 genomes]
rs1985747	0.81[ASN][1000 genomes]
rs1985821	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2222904	0.89[ASN][1000 genomes]
rs2246996	0.96[ASN][1000 genomes]
rs2366248	0.89[ASN][1000 genomes]
rs2428627	0.84[ASN][1000 genomes]
rs2465515	0.84[ASN][1000 genomes]
rs2525815	0.84[ASN][1000 genomes]
rs2525816	0.84[ASN][1000 genomes]
rs2525820	0.84[ASN][1000 genomes]
rs2525822	0.84[ASN][1000 genomes]
rs2525825	0.84[ASN][1000 genomes]
rs2525826	0.81[ASN][1000 genomes]
rs2525827	0.81[ASN][1000 genomes]
rs2689804	0.89[ASN][1000 genomes]
rs2689805	0.89[ASN][1000 genomes]
rs2689810	0.89[ASN][1000 genomes]
rs2689811	0.83[ASN][1000 genomes]
rs2707858	0.95[ASN][1000 genomes]
rs2707882	0.84[ASN][1000 genomes]
rs2707883	0.84[ASN][1000 genomes]
rs2707886	0.97[ASN][1000 genomes]
rs2707887	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2707897	0.87[ASN][1000 genomes]
rs2707911	0.84[ASN][1000 genomes]
rs2714640	0.80[ASN][1000 genomes]
rs2714642	0.89[ASN][1000 genomes]
rs2714653	0.97[ASN][1000 genomes]
rs2714655	0.97[ASN][1000 genomes]
rs2714656	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2714661	0.96[ASN][1000 genomes]
rs2714662	0.97[ASN][1000 genomes]
rs2714664	0.96[ASN][1000 genomes]
rs2714695	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2714696	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs333209	0.89[EUR][1000 genomes]
rs333210	0.89[EUR][1000 genomes]
rs4394329	0.92[ASN][1000 genomes]
rs55772364	0.84[ASN][1000 genomes]
rs56320258	0.84[ASN][1000 genomes]
rs56351881	0.84[ASN][1000 genomes]
rs57226669	0.84[ASN][1000 genomes]
rs57942274	0.84[ASN][1000 genomes]
rs59329952	0.81[ASN][1000 genomes]
rs60390345	0.84[ASN][1000 genomes]
rs60870507	0.84[ASN][1000 genomes]
rs724336	0.85[JPT][hapmap]
rs73381226	0.84[ASN][1000 genomes]
rs73705067	0.84[ASN][1000 genomes]
rs7777781	0.95[ASN][1000 genomes]
rs7789978	0.81[ASN][1000 genomes]
rs7803517	0.95[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs7803852	0.95[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs886475	1.00[CHB][hapmap];0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	esv2829876	chr7:79355196-79483480	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv888521	chr7:79371206-79483480	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv888522	chr7:79402551-79619012	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3429432	chr7:79447566-79449864	Enhancers Active TSS Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79445800-79449600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr7:79447400-79449000	Weak transcription	Fetal Lung	lung
3	chr7:79448400-79449600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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