Variant report

Variant	rs4394329
Chromosome Location	chr7:79449867-79449868
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 110 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:105)

rs_ID	r²[population]
rs1008311	0.86[ASN][1000 genomes]
rs1009198	0.81[ASN][1000 genomes]
rs1009199	0.86[ASN][1000 genomes]
rs10486911	0.83[ASN][1000 genomes]
rs11975054	0.86[ASN][1000 genomes]
rs11975127	0.86[ASN][1000 genomes]
rs11977110	0.92[ASN][1000 genomes]
rs12112783	0.83[ASN][1000 genomes]
rs12113482	0.86[ASN][1000 genomes]
rs12113913	0.85[ASN][1000 genomes]
rs12531185	0.86[ASN][1000 genomes]
rs1293091	0.95[ASN][1000 genomes]
rs1293109	0.95[ASN][1000 genomes]
rs1293110	0.93[ASN][1000 genomes]
rs1293111	0.92[ASN][1000 genomes]
rs1293112	0.95[ASN][1000 genomes]
rs1293113	0.95[ASN][1000 genomes]
rs1293115	0.95[ASN][1000 genomes]
rs1297413	0.95[ASN][1000 genomes]
rs1319297	0.81[ASN][1000 genomes]
rs1523834	0.84[ASN][1000 genomes]
rs16886625	0.89[ASN][1000 genomes]
rs17147916	0.89[ASN][1000 genomes]
rs17152857	0.92[ASN][1000 genomes]
rs17152858	0.92[ASN][1000 genomes]
rs17152859	0.92[ASN][1000 genomes]
rs17152860	0.92[ASN][1000 genomes]
rs17152864	0.92[ASN][1000 genomes]
rs17152888	0.92[ASN][1000 genomes]
rs17152926	1.00[ASN][1000 genomes]
rs17152944	0.97[ASN][1000 genomes]
rs17152972	0.86[ASN][1000 genomes]
rs17152982	0.83[ASN][1000 genomes]
rs17152992	0.83[ASN][1000 genomes]
rs17153038	0.82[ASN][1000 genomes]
rs17793556	0.86[ASN][1000 genomes]
rs1851752	0.92[ASN][1000 genomes]
rs1880167	0.87[ASN][1000 genomes]
rs1916732	0.86[ASN][1000 genomes]
rs1916740	0.86[ASN][1000 genomes]
rs1922725	0.95[ASN][1000 genomes]
rs1922726	0.95[ASN][1000 genomes]
rs1922728	0.93[ASN][1000 genomes]
rs1922734	0.86[ASN][1000 genomes]
rs1985747	0.89[ASN][1000 genomes]
rs2107408	0.83[ASN][1000 genomes]
rs2222904	0.86[ASN][1000 genomes]
rs2246996	0.93[ASN][1000 genomes]
rs2366248	0.86[ASN][1000 genomes]
rs2428627	0.81[ASN][1000 genomes]
rs2465515	0.81[ASN][1000 genomes]
rs2525815	0.81[ASN][1000 genomes]
rs2525816	0.81[ASN][1000 genomes]
rs2525820	0.81[ASN][1000 genomes]
rs2525822	0.81[ASN][1000 genomes]
rs2525825	0.81[ASN][1000 genomes]
rs2689804	0.86[ASN][1000 genomes]
rs2689805	0.86[ASN][1000 genomes]
rs2689810	0.86[ASN][1000 genomes]
rs2689811	0.80[ASN][1000 genomes]
rs2707858	0.92[ASN][1000 genomes]
rs2707882	0.81[ASN][1000 genomes]
rs2707883	0.81[ASN][1000 genomes]
rs2707886	0.95[ASN][1000 genomes]
rs2707887	0.95[ASN][1000 genomes]
rs2707897	0.84[ASN][1000 genomes]
rs2707911	0.81[ASN][1000 genomes]
rs2714642	0.86[ASN][1000 genomes]
rs2714653	0.95[ASN][1000 genomes]
rs2714655	0.95[ASN][1000 genomes]
rs2714656	0.93[ASN][1000 genomes]
rs2714661	0.93[ASN][1000 genomes]
rs2714662	0.95[ASN][1000 genomes]
rs2714664	0.93[ASN][1000 genomes]
rs2714695	0.95[ASN][1000 genomes]
rs2714696	0.95[ASN][1000 genomes]
rs3107865	1.00[AFR][1000 genomes]
rs55772364	0.92[ASN][1000 genomes]
rs56320258	0.92[ASN][1000 genomes]
rs56351881	0.92[ASN][1000 genomes]
rs57226669	0.92[ASN][1000 genomes]
rs57609264	0.86[ASN][1000 genomes]
rs57942274	0.92[ASN][1000 genomes]
rs59329952	0.89[ASN][1000 genomes]
rs60390345	0.92[ASN][1000 genomes]
rs60424611	0.83[ASN][1000 genomes]
rs60870507	0.92[ASN][1000 genomes]
rs61366591	0.86[ASN][1000 genomes]
rs6466823	0.86[ASN][1000 genomes]
rs6946316	0.86[ASN][1000 genomes]
rs6949163	0.86[ASN][1000 genomes]
rs6949761	0.83[ASN][1000 genomes]
rs6957059	0.82[ASN][1000 genomes]
rs6957093	0.82[ASN][1000 genomes]
rs73368688	0.83[ASN][1000 genomes]
rs73368692	0.83[ASN][1000 genomes]
rs73370544	0.82[ASN][1000 genomes]
rs73370545	0.82[ASN][1000 genomes]
rs73381226	0.92[ASN][1000 genomes]
rs73705067	0.92[ASN][1000 genomes]
rs73707160	0.86[ASN][1000 genomes]
rs73709915	0.86[ASN][1000 genomes]
rs73709922	0.82[ASN][1000 genomes]
rs7777781	0.92[ASN][1000 genomes]
rs7789978	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	esv2829876	chr7:79355196-79483480	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv888521	chr7:79371206-79483480	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv888522	chr7:79402551-79619012	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79449400-79450000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr7:79449400-79450000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr7:79449400-79450200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr7:79449600-79450000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr7:79449600-79450000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr7:79449600-79450000	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr7:79449600-79450000	Active TSS	Primary T killer naive cells fromperipheralblood	blood
8	chr7:79449600-79450000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr7:79449600-79450000	Active TSS	Brain Germinal Matrix	brain
10	chr7:79449600-79450000	Active TSS	Brain Inferior Temporal Lobe	brain
11	chr7:79449600-79450000	Active TSS	Brain Substantia Nigra	brain
12	chr7:79449600-79450000	Active TSS	Fetal Brain Female	brain
13	chr7:79449600-79450000	Flanking Active TSS	Osteobl	bone
14	chr7:79449600-79450200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr7:79449600-79452200	Weak transcription	Fetal Brain Male	brain
16	chr7:79449800-79450000	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr7:79449800-79450000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr7:79449800-79450000	Enhancers	Brain Angular Gyrus	brain
19	chr7:79449800-79450000	Flanking Active TSS	Brain Anterior Caudate	brain
20	chr7:79449800-79450000	Active TSS	Pancreatic Islets	Pancreatic Islet
21	chr7:79449800-79450000	Active TSS	Fetal Lung	lung
22	chr7:79449800-79450000	Enhancers	Hela-S3	cervix
23	chr7:79449800-79457400	Weak transcription	NHLF	lung

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