Variant report

Variant	rs6016757
Chromosome Location	chr20:40981098-40981099
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2213631	0.99[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs3746537	0.91[CHB][hapmap]
rs6016758	0.98[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs6016759	0.89[CHB][hapmap];0.89[YRI][hapmap]
rs6030163	0.89[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751913	chr20:40422982-41269321	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv532516	chr20:40451059-41097155	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:40968200-40987800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr20:40980600-40981200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr20:40980600-40981200	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr20:40980600-40981200	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr20:40980800-40981200	Enhancers	Fetal Muscle Trunk	muscle
6	chr20:40980800-40981200	Enhancers	Left Ventricle	heart
7	chr20:40980800-40984200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr20:40981000-40981600	Weak transcription	Cortex derived primary cultured neurospheres	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links