Variant report

Variant	rs6030163
Chromosome Location	chr20:40983645-40983646
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs2213631	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3746536	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3746537	1.00[CHB][hapmap];0.90[JPT][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4810354	0.90[CHB][hapmap];0.93[LWK][hapmap];0.90[YRI][hapmap]
rs6016757	0.89[CHB][hapmap]
rs6016758	0.93[ASN][1000 genomes]
rs6016759	1.00[CHB][hapmap]
rs6102795	0.90[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751913	chr20:40422982-41269321	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv532516	chr20:40451059-41097155	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:40968200-40987800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr20:40980800-40984200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr20:40983000-40983800	Enhancers	Right Ventricle	heart
4	chr20:40983400-40983800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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