Variant report

Variant	rs60169322
Chromosome Location	chr14:20995082-20995083
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs17112951	0.89[AMR][1000 genomes]
rs55795834	0.93[AFR][1000 genomes]
rs55917840	0.93[AFR][1000 genomes]
rs55987734	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56294788	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57630159	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58957711	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60097785	0.83[AFR][1000 genomes]
rs60239610	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60292704	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60508855	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7146539	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7155848	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73571210	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73571212	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8010422	0.86[AFR][1000 genomes]
rs8018216	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8022560	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8022887	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8022889	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8022924	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043923	chr14:20338742-21336425	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	203 gene(s)	inside rSNPs	diseases
2	nsv541970	chr14:20338742-21336425	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	203 gene(s)	inside rSNPs	diseases
3	esv21015	chr14:20800765-21257878	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
4	nsv974311	chr14:20994796-20997021	Enhancers Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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