Variant report

Variant	rs55987734
Chromosome Location	chr14:20994905-20994906
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:20922450..20924402-chr14:20992995..20995331,2	MCF-7	breast:
2	chr14:20935924..20938914-chr14:20993762..20995397,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198805	Chromatin interaction
ENSG00000092094	Chromatin interaction
ENSG00000100823	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10162403	1.00[EUR][1000 genomes]
rs12100586	1.00[EUR][1000 genomes]
rs12100598	1.00[EUR][1000 genomes]
rs12100800	1.00[EUR][1000 genomes]
rs12100933	1.00[EUR][1000 genomes]
rs12100943	1.00[EUR][1000 genomes]
rs12101090	1.00[EUR][1000 genomes]
rs12101096	1.00[EUR][1000 genomes]
rs12101201	1.00[EUR][1000 genomes]
rs12101227	1.00[EUR][1000 genomes]
rs17092013	1.00[EUR][1000 genomes]
rs17112807	1.00[EUR][1000 genomes]
rs17112928	1.00[EUR][1000 genomes]
rs17112943	1.00[EUR][1000 genomes]
rs17112951	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17113273	1.00[EUR][1000 genomes]
rs55747318	1.00[EUR][1000 genomes]
rs55795834	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs55917840	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs55980661	1.00[EUR][1000 genomes]
rs56294788	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57630159	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58957711	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58964539	1.00[EUR][1000 genomes]
rs59045719	1.00[EUR][1000 genomes]
rs59612537	1.00[EUR][1000 genomes]
rs59800190	1.00[EUR][1000 genomes]
rs60097785	0.86[AFR][1000 genomes]
rs60169322	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60239610	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60292704	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60508855	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60971353	1.00[EUR][1000 genomes]
rs61626479	1.00[EUR][1000 genomes]
rs7143903	1.00[EUR][1000 genomes]
rs7146539	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7152653	1.00[EUR][1000 genomes]
rs7155848	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7161484	1.00[EUR][1000 genomes]
rs73571203	1.00[EUR][1000 genomes]
rs73571209	1.00[EUR][1000 genomes]
rs73571210	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73571212	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73571302	1.00[EUR][1000 genomes]
rs74034305	1.00[EUR][1000 genomes]
rs74034308	1.00[EUR][1000 genomes]
rs74034309	1.00[EUR][1000 genomes]
rs74037158	1.00[EUR][1000 genomes]
rs74037159	1.00[EUR][1000 genomes]
rs74037160	1.00[EUR][1000 genomes]
rs8003273	1.00[EUR][1000 genomes]
rs8010422	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8018216	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8022560	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8022642	1.00[EUR][1000 genomes]
rs8022887	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8022889	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8022924	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043923	chr14:20338742-21336425	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	203 gene(s)	inside rSNPs	diseases
2	nsv541970	chr14:20338742-21336425	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	203 gene(s)	inside rSNPs	diseases
3	esv21015	chr14:20800765-21257878	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
4	nsv974311	chr14:20994796-20997021	Enhancers Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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