Variant report

Variant	rs7143903
Chromosome Location	chr14:21122149-21122150
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:21121488..21124008-chr14:21129043..21130798,2	MCF-7	breast:
2	chr14:21120475..21122156-chr14:21149864..21151948,2	MCF-7	breast:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10162403	1.00[EUR][1000 genomes]
rs12100586	1.00[EUR][1000 genomes]
rs12100598	1.00[EUR][1000 genomes]
rs12100800	1.00[EUR][1000 genomes]
rs12100933	1.00[EUR][1000 genomes]
rs12100943	1.00[EUR][1000 genomes]
rs12101090	1.00[EUR][1000 genomes]
rs12101096	1.00[EUR][1000 genomes]
rs12101201	1.00[EUR][1000 genomes]
rs12101227	1.00[EUR][1000 genomes]
rs17092013	1.00[EUR][1000 genomes]
rs17112807	1.00[EUR][1000 genomes]
rs17112928	1.00[EUR][1000 genomes]
rs17112943	1.00[EUR][1000 genomes]
rs17112951	1.00[EUR][1000 genomes]
rs17113273	1.00[EUR][1000 genomes]
rs2228653	1.00[EUR][1000 genomes]
rs55747318	1.00[EUR][1000 genomes]
rs55795834	1.00[EUR][1000 genomes]
rs55917840	1.00[EUR][1000 genomes]
rs55980661	1.00[EUR][1000 genomes]
rs55987734	1.00[EUR][1000 genomes]
rs56294788	1.00[EUR][1000 genomes]
rs57630159	1.00[EUR][1000 genomes]
rs58957711	1.00[EUR][1000 genomes]
rs58964539	1.00[EUR][1000 genomes]
rs59045719	1.00[EUR][1000 genomes]
rs59612537	1.00[EUR][1000 genomes]
rs59800190	1.00[EUR][1000 genomes]
rs60239610	1.00[EUR][1000 genomes]
rs60292704	1.00[EUR][1000 genomes]
rs60508855	1.00[EUR][1000 genomes]
rs60971353	1.00[EUR][1000 genomes]
rs61626479	1.00[EUR][1000 genomes]
rs7146539	1.00[EUR][1000 genomes]
rs7152653	1.00[EUR][1000 genomes]
rs7155848	1.00[EUR][1000 genomes]
rs7160116	1.00[EUR][1000 genomes]
rs7161484	1.00[EUR][1000 genomes]
rs73571203	1.00[EUR][1000 genomes]
rs73571209	1.00[EUR][1000 genomes]
rs73571210	1.00[EUR][1000 genomes]
rs73571212	1.00[EUR][1000 genomes]
rs73571302	1.00[EUR][1000 genomes]
rs74034305	1.00[EUR][1000 genomes]
rs74034308	1.00[EUR][1000 genomes]
rs74034309	1.00[EUR][1000 genomes]
rs74037158	1.00[EUR][1000 genomes]
rs74037159	1.00[EUR][1000 genomes]
rs74037160	1.00[EUR][1000 genomes]
rs8003273	1.00[EUR][1000 genomes]
rs8010422	1.00[EUR][1000 genomes]
rs8018216	1.00[EUR][1000 genomes]
rs8022560	1.00[EUR][1000 genomes]
rs8022642	1.00[EUR][1000 genomes]
rs8022887	1.00[EUR][1000 genomes]
rs8022889	1.00[EUR][1000 genomes]
rs8022924	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043923	chr14:20338742-21336425	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	203 gene(s)	inside rSNPs	diseases
2	nsv541970	chr14:20338742-21336425	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	203 gene(s)	inside rSNPs	diseases
3	esv21015	chr14:20800765-21257878	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
4	nsv901468	chr14:20997221-21149785	Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv1051489	chr14:21026592-21214763	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
6	nsv1203	chr14:21120868-21166077	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:21120400-21122800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr14:21121000-21122200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr14:21121000-21122200	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
4	chr14:21121000-21122200	Bivalent Enhancer	Placenta	Placenta
5	chr14:21121000-21122200	Active TSS	A549	lung
6	chr14:21121000-21122200	Flanking Active TSS	K562	blood
7	chr14:21121000-21122400	Active TSS	H1 Cell Line	embryonic stem cell
8	chr14:21121000-21122400	Active TSS	HUES48 Cell Line	embryonic stem cell
9	chr14:21121000-21122400	Active TSS	HUES6 Cell Line	embryonic stem cell
10	chr14:21121000-21122400	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
11	chr14:21121000-21122400	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
12	chr14:21121000-21122400	Bivalent Enhancer	Small Intestine	intestine
13	chr14:21121000-21122600	Active TSS	H9 Cell Line	embryonic stem cell
14	chr14:21121000-21122600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
15	chr14:21121000-21122600	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
16	chr14:21121000-21122600	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
17	chr14:21121200-21122200	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr14:21121200-21122200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr14:21121200-21122200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr14:21121200-21122200	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
21	chr14:21121200-21122200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr14:21121200-21122400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr14:21121200-21122600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
24	chr14:21121200-21122600	Bivalent Enhancer	Primary T killer memory cells from peripheral blood	blood
25	chr14:21121400-21122200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
26	chr14:21121400-21122200	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
27	chr14:21121400-21122400	Bivalent Enhancer	Primary B cells from peripheral blood	blood
28	chr14:21121400-21122600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
29	chr14:21121600-21122200	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
30	chr14:21121600-21122200	Bivalent Enhancer	Colonic Mucosa	Colon
31	chr14:21121600-21122400	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
32	chr14:21121600-21122400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr14:21121600-21122600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
34	chr14:21121600-21122600	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
35	chr14:21121800-21122200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr14:21121800-21122200	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr14:21121800-21122400	Bivalent Enhancer	HepG2	liver
38	chr14:21121800-21122600	Bivalent Enhancer	Duodenum Mucosa	Duodenum
39	chr14:21122000-21122200	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr14:21122000-21122200	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr14:21122000-21122200	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
42	chr14:21122000-21122200	Bivalent Enhancer	Brain Hippocampus Middle	brain
43	chr14:21122000-21122200	Bivalent Enhancer	Brain Substantia Nigra	brain
44	chr14:21122000-21122200	Flanking Active TSS	GM12878-XiMat	blood
45	chr14:21122000-21122200	Flanking Bivalent TSS/Enh	NHEK	skin
46	chr14:21122000-21122400	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
47	chr14:21122000-21122400	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr14:21122000-21122600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
49	chr14:21122000-21122800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell

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