Variant report

Variant	rs12100800
Chromosome Location	chr14:20990078-20990079
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RNASE10-1	chr14:20989845-20990339	XLOC_010750

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10162403	1.00[EUR][1000 genomes]
rs12100586	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12100598	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12100933	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12100943	1.00[EUR][1000 genomes]
rs12101090	1.00[EUR][1000 genomes]
rs12101096	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12101201	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12101227	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17092013	1.00[EUR][1000 genomes]
rs17112807	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17112928	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17112943	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17112951	1.00[EUR][1000 genomes]
rs17113273	1.00[EUR][1000 genomes]
rs55747318	1.00[EUR][1000 genomes]
rs55795834	1.00[EUR][1000 genomes]
rs55917840	1.00[EUR][1000 genomes]
rs55980661	1.00[EUR][1000 genomes]
rs55987734	1.00[EUR][1000 genomes]
rs56294788	1.00[EUR][1000 genomes]
rs57630159	1.00[EUR][1000 genomes]
rs58957711	1.00[EUR][1000 genomes]
rs58964539	1.00[EUR][1000 genomes]
rs59045719	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59612537	1.00[EUR][1000 genomes]
rs59800190	1.00[EUR][1000 genomes]
rs60239610	1.00[EUR][1000 genomes]
rs60292704	1.00[EUR][1000 genomes]
rs60508855	1.00[EUR][1000 genomes]
rs60971353	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61626479	1.00[EUR][1000 genomes]
rs7143903	1.00[EUR][1000 genomes]
rs7146539	1.00[EUR][1000 genomes]
rs7152653	1.00[EUR][1000 genomes]
rs7155848	1.00[EUR][1000 genomes]
rs7161484	1.00[EUR][1000 genomes]
rs73571203	1.00[EUR][1000 genomes]
rs73571209	1.00[EUR][1000 genomes]
rs73571210	1.00[EUR][1000 genomes]
rs73571212	1.00[EUR][1000 genomes]
rs73571302	1.00[EUR][1000 genomes]
rs74034305	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74034308	1.00[EUR][1000 genomes]
rs74034309	1.00[EUR][1000 genomes]
rs74037158	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74037159	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74037160	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8010422	1.00[EUR][1000 genomes]
rs8018216	1.00[EUR][1000 genomes]
rs8022560	1.00[EUR][1000 genomes]
rs8022642	1.00[EUR][1000 genomes]
rs8022887	1.00[EUR][1000 genomes]
rs8022889	1.00[EUR][1000 genomes]
rs8022924	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043923	chr14:20338742-21336425	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	203 gene(s)	inside rSNPs	diseases
2	nsv541970	chr14:20338742-21336425	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	203 gene(s)	inside rSNPs	diseases
3	esv21015	chr14:20800765-21257878	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:20985200-20990400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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